Chemicals, disease and other stressors can increase a salmon's chance of being eaten or reduce its ability to catch food. We wrap up our series on the Salish Sea Marine Survival Project with a look at some of the lesser-known, but still significant factors contributing to salmon declines in the Salish Sea.

A recent influx of anchovies into Puget Sound may have saved some steelhead from predators, but researchers seek more evidence to prove the connection. Our series on the Salish Sea Marine Survival Project continues with a look at these and other potential impacts from predators on the region's salmon and steelhead.

Getting bigger faster can help save juvenile Chinook salmon from a gauntlet of hungry predators ranging from birds and marine mammals to larger fish. We continue our series on the Salish Sea Marine Survival Project with a look at what helps salmon grow and prepare for life in the open ocean. 

The 2018 Salish Sea Ecosystem Conference took place April 4-6 at the Washington State Convention Center in Seattle, WA. It featured 588 presentations across 17 topic areas.

A high-profile salmon escape led to a ban on salmon farms in Washington earlier this year. But just across the border, scientists say salmon farms in British Columbia expose migrating fish from Puget Sound to potential maladies like parasites, bacteria and dangerous viruses. They say simply getting rid of salmon farms in Washington does not put the potential impacts to rest. 

Pacific herring exposed to stormwater in Puget Sound show some of the same effects as fish exposed to major oil spills. Symptoms include heart and developmental problems.  

Kelps are large seaweeds in the order Laminariales that form dense canopies in temperate rocky intertidal and subtidal habitats less than 30 m in depth. The kelp flora of the Pacific Northwest is one of the most diverse in the world.

Scientists are trying to learn how to restore Puget Sound’s diminishing kelp forests in an effort to stave off habitat loss for rockfish and other threatened species. We report on new findings presented at the 2018 Salish Sea Ecosystem Conference in Seattle. 

A 2018 report from the Washington State Department of Ecology presents results from 27 years of sampling sediments and benthic invertebrates at 10 long-term stations throughout the greater Puget Sound area every year from 1989 through 2015.

A 2017 paper in the journal Northwestern Naturalist looks at distribution patterns for Glaucous-winged Gulls across associated habitats in the Salish Sea.  

As wildlife managers work to recover Puget Sound’s diminished Chinook population, a proposed white paper is expected to review the impacts of some of the salmon's chief predators. The study would include a section on potential management of seals and sea lions, prompting open discussion of a long taboo subject: Could officials seek to revise the Marine Mammal Protection Act — or even conduct lethal or non-lethal removal of seals and sea lions in some cases? Such actions are hypothetical, but we look at some of the ongoing discussions around the issue as prompted by a new resolution from the Puget Sound Leadership Council. 

A December 2017 article in the journal PLOS One reports that incidents and violations among whale watching vessels have increased in the Central Salish Sea since 1998.

A 2017 paper in the journal Marine Mammal Science examines harbor porpoise group structure and site fidelity in the Salish Sea. 

A 2017 paper in the journal Aquatic Mammals reports that harbor seals in the Salish Sea are less concerned about predators when they become habituated to humans. 

Increased consumption of Chinook salmon by seals and sea lions in the Salish Sea “could be masking the success of coastwide salmon recovery efforts,” according to a new study published in the journal Scientific Reports. Endangered resident orcas are said to be declining in part due to a lack of available Chinook, the orcas' preferred prey.

The 2017 State of the Sound is the Puget Sound Partnership’s fifth biennial report to the Legislature on progress toward the recovery of Puget Sound by 2020. The document reports on both the status of the Partnership's recovery efforts and the status of a suite of ecosystem indicators.

The Orange Sea Pen, also called the Fleshy Sea Pen or Gurney’s Sea Pen, resembles a colorful autumn tree waving in the “breeze” of moving water currents. Article courtesy of the Washington Department of Ecology's Eyes Under Puget Sound series. 

Formaldehyde is often used to control parasites on hatchery salmon and trout. The U.S. Environmental Protection Agency and the Washington State Department of Ecology conducted a joint study of formaldehyde concentrations in effluent from hatcheries in the Pacific Northwest. 

The 2016 Salish Sea Ecosystem Conference took place April 13-15 at the Westin Bayshore in Vancouver BC. Over 1100 scientists and policy experts attended.

In recent decades, hundreds of millions of dollars have been spent to restore habitat for Puget Sound salmon. In this article, we look at how scientists are gauging their progress. Are environmental conditions improving or getting worse? The answer may depend on where you look and who you ask.

A biennial report produced by the Governor's Salmon Recovery Office provides stories and data about salmon, habitat, and salmon recovery in Washington, including Puget Sound.

The marine habitat of Puget Sound can be divided up into nearshore, benthic (associated with the sea floor), and pelagic (open water) habitats. This article focuses on the pelagic habitat within the Puget Sound. This article was prepared as part of the 2015 Puget Sound Fact Book produced by the University of Washington Puget Sound Institute. 

Detritus, or dying or decaying matter, is a central component of the nearshore food web in Puget Sound. This article was prepared as part of the 2015 Puget Sound Fact Book produced by the University of Washington Puget Sound Institute. 

Scientists want to know why eelgrass is on the decline in some areas of Puget Sound and not others. The answer will affect future strategies for protecting one of the ecosystem’s most critical saltwater plants.

The Puget Sound Ecosystem Monitoring Program (PSEMP) is an independent program established by state and federal statute to monitor environmental conditions in Puget Sound. 

Vessel traffic is increasing in the Puget Sound region. A 2017 article in the journal Aquatic Mammals looks at the potential impacts that increasing vessel disturbance may have on resident harbor seal populations and how future management decisions may need to look at variable buffer zones related to level of human activity.

As threatened Chinook populations in Puget Sound continue to lose ground, the state is looking to new strategies to reverse the trend. In the Skagit watershed, the scientists — and the fish — are among those leading the way. 

A new study shows that increased populations of seals and sea lions are eating far more of Puget Sound’s threatened chinook than previously known, potentially hampering recovery efforts for both salmon and endangered killer whales. 

Many groups have been formed around the goal of saving salmon, but few people talk about a concerted effort to save microscopic creatures. Whether or not a pro-bug movement catches on, future strategies to save salmon are likely to incorporate ideas for restoring streambound creatures known as benthic invertebrates.

A September 2016 report from the University of Washington Puget Sound Institute provides an overview of key products, results, and recommendations presented in three previous reports reviewing 50 projects from the first four years of the Puget Sound Marine and Nearshore Grant Program.

A study in the journal PLOS ONE uses volunteer diver surveys to assess the impacts of sea star wasting disease in the Salish Sea. Data shows that sunflower sea stars were especially hard hit and have all but disappeared from the region. 

Invasive species are considered a top threat to the balance of ecosystems worldwide. New discoveries of non-native green crabs in Puget Sound have highlighted that concern here at home, but invasive species can impact more than just the food web. Some introduced species can produce toxins that accumulate in shellfish or by directly infecting the human body.

The Puget Sound Ecosystem Monitoring Program released its fifth annual Marine Waters Overview this week. The report provides an assessment of marine conditions for the year 2015 and includes updates on water quality as well as status reports for select plankton, seabirds, fish and marine mammals.

Another European green crab has been spotted in Puget Sound prompting concern that the species may gain a foothold in the region. 

Sand lance in parts of British Columbia are ingesting small pieces of plastic that may be passed through the food web.

After an almost complete collapse in the 1970s, harbor porpoise populations in Puget Sound have rebounded. Scientists are celebrating the recovery of the species sometimes known as the "puffing pig." 

Social scientists around the Salish Sea are predicting the effects of environmental change through the lens of culturally important foods.

Some of the most important fish in the Salish Sea food web are also the most mysterious. Researchers have only begun to understand how many there are, where they go, and how we can preserve their populations for the future. A University of Washington researcher describes how scientists are looking into the problem.

Gaps in regulations could allow invasive species to hitch a ride on ships and boats. We report on some of the potential impacts, and how state and federal agencies are trying to solve the problem. 

Concerns over the potential arrival of the European green crab have inspired a small army of volunteers. A search is underway for early signs of an invasion.

Almost twenty years ago, volunteer biologists began an intensive survey for invasive species in the marine waters of Puget Sound. In a little over a week of hunting, they found 39 such species, including 11 never before seen in the region.

The Washington Invasive Species Council evaluated more than 700 invasive species in and around Washington, considering their threats to the state’s environment, economy, and human health. They included terrestrial plants and animals, aquatic plants and animals (both freshwater and saltwater), insects and diseases. In the end, the council listed 50 “priority species” for action, including five marine animals and two marine plants, along with one virus that infects fish. 

A July 2016 report from the University of Washington Puget Sound Institute summarizes and reviews 10 EPA-funded projects focusing on Puget Sound's marine and nearshore environments. The projects were conducted between 2011-2015 with support from the EPA's National Estuary Program.  The report is an analysis of findings on invasive species, toxics, oil spill, and integrated risk assessment.

New techniques for studying orcas have been credited with breakthroughs in reproductive and developmental research. Drones and hormone-sniffing dogs are helping scientists connect declines in food supply with low birth rates and poor health. Update: The research described in this 2016 article has now been published in the 6/29/17 issue of the journal PLOS ONE. 

Birds serve as useful indicators of ecosystem change and ecosystem health, biodiversity, condition of habitats, and climate change. Many people and organizations have their eyes on marine birds in Puget Sound.

New, smaller acoustic tags will allow scientists to track steelhead migrations in Puget Sound in ways that were once impossible. Will they provide answers to the mysterious decline of these now-threatened fish? 

The Salish Sea Marine Survival Project has mobilized dozens of organizations in the U.S. and Canada to find an answer to one of the region's greatest mysteries. What is killing so many young salmon before they can return home to spawn? A series of talks at the 2016 Salish Sea Ecosystem Conference brought together some of the latest research. 

Many of Puget Sound's Chinook salmon spend their entire lives in local waters and don't migrate to the open ocean. These fish tend to collect more contaminants in their bodies because of the sound's relatively high levels of pollution. 

It turns out that a gooey substance known as biofilm is a big deal for Salish Sea shorebirds, providing critical food for some species. But could a proposed port expansion in Vancouver threaten this slimy resource?

Researchers are proposing a shift in thinking about how some of the region’s most damaging pollutants enter Puget Sound species like herring, salmon and orcas.

Researchers are studying how persistent pollutants such as PCBs avoid settling to the bottom of Puget Sound. This article continues our coverage of new theories on the spread of toxic chemicals in the food web. 

The number of species of concern in the Salish Sea is growing at an average annual rate of 2.6%, according to a report published in the proceedings of the 2016 Salish Sea Ecosystem Conference in Vancouver, B.C.

The number of species of concern in the Salish Sea is growing at an average annual rate of 2.6%, according to a report published in the proceedings of the 2016 Salish Sea Ecosystem Conference in Vancouver, B.C.

The mysterious practice of killing porpoises may have a useful function, but it has yet to be fully explained, according to orca researcher Deborah Giles.

Where shoreline bulkheads remain in place, the loss of spawning habitat used by surf smelt is likely to reach 80 percent.

Rising sea levels are expected to exacerbate habitat loss caused by bulkheads, according to studies in the San Juan Islands.

The removal of shoreline armoring in Puget Sound has become a priority for state and federal agencies, but until recently there have been relatively few scientific studies of armoring's local impact. New research looks at the pronounced biological and ecological effects of these common shoreline structures, especially for tiny beach-dwelling creatures that make up the base of the food web.

The genus Sternaspis is comprised of sedentary invertebrates with short and thick anterior setae. The dumbbell worm (Sternaspis affinis) can be found on the West Coast of North America, from Alaska to the Gulf of California.

The Doto is a species of sea slug, also known as a nudibranch. It is a marine gastropod in the family Dotidae. This species was first discovered in British Columbia and has been reported as far south as Santa Barbara, California.

Priapula are a small phylum of small, worm-like animals found in Puget Sound. They occur in most seas, both tropical and polar, at a variety of depths, from shallow coastal waters to as far down as 7,200 meters. 

Sea pens are marine cnidarians that belong to the order Pennatulacea. They are colonial organisms, composed of specialized polyps.

A 2016 technical report from the Washington Department of Fish and Wildlife and the Cascadia Research Collective details the decline of the harbor porpoise in Puget Sound in the 1970s and reports that species numbers have increased over the past twenty years likely due to outside immigration.

A 2016 paper in Environmental Pollution identifies dozens of pharmaceuticals and other compounds that are accumulating in Puget Sound fish such as salmon.

A 2016 paper in the journal Oecologia describes how individual herring populations in Puget Sound exhibit a portfolio effect, collectively influencing and stabilizing the region’s population as a whole. 

Competition occurs when individuals of different species struggle to obtain the same resource in an ecosystem (such as food or living space). Adaptations, such as physical mutations and behavior modifications, can help an organism outcompete its competitors. 

Food webs are natural interconnections of food chains and depict what-eats-what in an ecological community. While Puget Sound represents a specific food web, the organisms that reside within that web often travel outside the region. In this way, one community's food web can be drastically affected by a change in a neighboring ecosystem.

Decaying organic matter plays an important role in marine ecosystems. 

Chinook, coho and sockeye salmon, along with steelhead trout, live in the Lake Washington watershed and navigate a treacherous route through the Ballard Locks on their way to Puget Sound.

Lake Washington was heavily contaminated by untreated sewage until extensive pollution controls by the city of Seattle. 

The health of an ecosystem is tied closely to the health of its food webs. This article provides an overview of the concept, origin, and characteristics of a food web and how predator and prey relationships are shaped in the Salish Sea.  

A 2015 review in Ocean & Coastal Management looks at trends in research related to anthropogenic noise and its affect on a wide variety of marine organisms, from whales and fish to invertebrates. The review includes case studies from the Salish Sea. 

This article describes the first known case of conjoined twins in a harbor seal. The case was documented in the Salish Sea region where harbor seals are often used as indicators of contaminant levels. However, researchers say their findings do not support that this anomaly was due to any common contaminants and hypothesize that the twinning was caused by disordered embryo migration and fusion. 

Pacific herring have long been considered an essential part of the Puget Sound food web. Now, studies are beginning to reveal how diseases in herring could be reverberating through the ecosystem, affecting creatures large and small. We continue our coverage of the ecological impacts of disease in Puget Sound with this look at the region's most well-known forage fish.

Chinook, coho and steelhead populations in Puget Sound have declined dramatically over the past 30 years. In some cases, counts of fish returning to the rivers are just a tenth what they were in the 1980s. While many possible causes of this decline are under consideration, some researchers are focusing on the combined effects of predators and disease. This article continues our coverage of the ecological impacts of disease in Puget Sound.

From orcas to starfish to humans, disease affects every living creature in the ecosystem. Scientists are increasingly alarmed by its potential to devastate already compromised populations of species in Puget Sound.  

The 2015 State of the Sound is the Puget Sound Partnership’s fourth biennial report to the Legislature on progress toward the recovery of Puget Sound by 2020. The document reports on both the status of the Partnership's recovery efforts and the status of a suite of ecosystem indicators.

Researchers updating a 1980 fish catalog have found evidence of 37 additional fish species in the Salish Sea. This information, accompanied by hundreds of detailed illustrations, is seeding a new reference book expected to gain wide use among scientists, anglers and conservationists.

The 2015 Puget Sound Fact Book brings together statistics and other information about the health and makeup of the Puget Sound ecosystem. Areas of focus include climate change, geography, water quality, habitats, human dimensions and regional species. The fact book was prepared for the Encyclopedia of Puget Sound with funding from the Environmental Protection Agency and the Puget Sound Partnership.

A 2015 NOAA report creates an updated and comprehensive list of the fishes of the Salish Sea. 

In the 1940s, harbor porpoise were among the most frequently sighted cetaceans in Puget Sound, but by the early 1970s they had all but disappeared from local waters. Their numbers have since increased, but they remain a Species of Concern in the state of Washington. This in-depth profile looks at harbor porpoise in the Salish Sea, and was prepared by the SeaDoc Society for inclusion in the Encyclopedia of Puget Sound. 

A report from NOAA and the Puget Sound Ecosystem Monitoring Program provides an overview of 2014 marine water quality and conditions in Puget Sound from comprehensive monitoring and observing programs.

This report documents how Washingtonians have responded to the challenges of protecting and restoring salmon and steelhead to healthy status. It also serves as a tool to summarize achievements, track salmon recovery progress through common indicators, and identify data gaps that need to be filled.

A 2015 article in the journal Environmental Science and Technology presents additional isotopic evidence that glaucus-winged gulls in the Salish Sea are shifting their diets from marine to terrestrial sources due to human impacts. Scientists hypothesize that declining forage fish may be the cause. 

The University of Washington Climate Impacts Group has been analyzing the potential effects of climate change in Puget Sound. The projections below represent some of their most recent reporting about expected conditions in the region over the next 50 to 100 years. Support for this article was provided by the Puget Sound Partnership.

The symposium was held on September 12–14, 2012, at the University of Washington, Friday Harbor Laboratories campus. Sixty scientists, graduate students, and fisheries policy experts convened; showcasing ongoing research, conservation, and management efforts targeting forage fish from regional and national perspectives.

The baseline assessment summarizes the status and trends of 15 priority invasive species, as identified by the Washington Invasive Species Council, within the Puget Sound Basin.

This report, Priority science for restoring and protecting Puget Sound: a Biennial Science Work Plan for 2011-2013, identifies priority science and monitoring questions needed to coordinate and implement effective recovery and protection strategies for Puget Sound.

Salmon recovery demands both dedication among people with different interests, and sustained resources. This biennial report tells the story of the progress made to date and the challenges ahead.

Sound Science: Synthesizing Ecological and Socio-economic Information about the Puget Sound Ecosystem summarizes what we know about the greater Puget Sound ecosystem and what we think could happen in the future given present trajectories and trends.

The State of the Sound 2004 provides answers about the health of Puget Sound and Washington State’s work to protect it. 

State of the Sound 2007 takes a scientific look at the health of Puget Sound and the status of its marine life, habitats, water quality and climate. The report tracks more than two dozen environmental indicators that provide insight into the health of the Sound and threats to that health.

The Puget Sound Update is a technical report that integrates results of PSAMP and other scientific activities in Puget Sound focused on marine life and nearshore habitat, marine and freshwater quality, and toxic contamination.

The Puget Sound Action Agenda lays out the work needed to protect and restore Puget Sound into the future. It is intended to drive investment and action. The 2012 Action Agenda is the result of over a year of work with state and federal agencies, tribal governments, local governments, representatives of the business and environmental caucuses, and other interested partners. It builds on the first Action Agenda, created in 2008, and progress since then.

The Puget Sound Actiona Agenda is a shared plan for Puget Sound recovery resulting from a collaboration by state and federal agencies, tribal governments, local governments, business and environmental groups, and others. 

This article was originally published by the Washington Department of Fish and Wildlife as part of its status report on Tufted Puffins: Washington State Status Report for the Tufted Puffin (2015)

A 2000 report from the Washington Department of Fish and  Wildlife provides information on haulout sites for harbor seals, Steller sea lions, California sea lions, and northern elephant seals located in Washington waters. 

Scientists say low marine survival rates threaten Puget Sound coho salmon populations. A 2015 article in the journal Marine and Coastal Fisheries reports that wild cohos in the Salish Sea had higher smolt survival rates over a 30 year period than hatchery coho salmon. Smolt survival in the Strait of Georgia during that time declined faster than it did in Puget Sound. 

A December 2014 report from the University of Washington examines when and where climate change impacts will occur in the Puget Sound watershed.

When and where will we see the impacts of climate change in Puget Sound? A web-based tool factors in dozens of site-specific variables for watersheds throughout the Pacific Northwest. The resource was developed by the University of Washington Climate Impacts Group with support from the EPA, the US Army Corps of Engineers and the Center for Data Science, University of Washington-Tacoma.

A 2015 paper in the Marine Ecology Press Series reports a trend toward more jellyfish and less of some forage fish species in Puget Sound. The paper analyzes more than 40 years of state data, and assesses potential human causes for the shift.

A 2015 report from the Washington Department of Fish and Wildlife reviews information relevant to the status of the tufted puffin in Washington and addresses factors affecting this status. 

A 2015 article published in the Marine Ecology Progress Series identifies intraspecific differences in diet between harbor seals in the Salish Sea, suggesting implications for marine reserve management. 

A 2015 report from the Washington State Department of Natural Resources summarizes the status and trends for native eelgrass and other seagrasses in Puget Sound from 2010-2013.

This paper summarizes a 2014 report ranking the greatest human-caused threats to the Puget Sound ecosystem. 

A study in the Journal of Comparative Physiology shows that muscle development necessary for diving can take several years to mature in harbor porpoises. Scientists argue that this may make immature harbor porpoises more vulnerable than adults to impacts from boat traffic or other disturbances. 

A 2015 paper in the journal Marine Policy examines surveys of Puget Sound anglers to provide baseline information related to rockfish conservation. 

A 2015 paper in the journal The Condor: Ornithological Applications describes century-long trends in Glaucous-winged Gull populations in British Columbia.

A 2014 report by the North Cascadia Adaptation Partnership identifies climate change issues relevant to resource management in the North Cascades, and recommends solutions that will facilitate the transition of the diverse ecosystems of this region into a warmer climate.

A 2015 paper presented to the International Whaling Commission compares the impacts of kayaks and powerboats on killer whale populations.

A 2014 Washington State Department of Ecology report provides a taxonomic guide for Puget Sound sediment-dwelling invertebrates (benthos). Surveys of these species are used to monitor the health of the foodweb, as well as levels of toxic contaminants in the seafloor.

A 2014 paper in Endangered Species Research suggests that harbour porpoises inhabiting coastal waters of southern British Columbia constitute a single genetic population, which should be reflected in management decisions.

A 2014 report by the Kitsap Public Heath District describes the goals and achievements of the Shellfish Restoration and Protection Project including: increasing harvestable shellfish growing areas, establishing a routine shoreline monitoring program, improving water quality, and increasing education of water quality and shellfish protection.

A 2005 report from the Washington Sea Grant Program describing the history and current state of native Olympia oysters including their ecology, history with human interactions, prefered habitat, and reestablishment efforts in the Puget Sound region.

The shellfish industry is a cornerstone of the Puget Sound economy, but the region's famed mollusks provide more than just money and jobs. They offer what are called ecosystem services—a wide variety of benefits that humans derive from an ecosystem.

This 2006 technical report for the Puget Sound Nearshore Partnership describes how shellfish have high ecological, economical, cultural, recreational value, however human activity is threatening their existence by altering their native habitat with changes in land use, shoreline modifications, stormwater, sewage and industrial discharge.

A December 2014 paper in the journal Aquatic Ecosystem Health & Management describes a project to identify transboundary ecosystem indicators for the Salish Sea. 

Northwest Coast First Peoples made clam garden terraces to expand ideal clam habitat at tidal heights that provided optimal conditions for clam growth and survival, therefore enhancing food production and increasing food security.

A virus is the likely cause of sea-star die-offs on the Northeast Pacific Coast and in Puget Sound, according to a November 2014 paper published in the Proceedings of the National Academy of Sciences.

A 2014 literature review in the journal Ocean & Coastal Management suggests negative effects of nonnative eelgrass on the native species. 

Scientists are rethinking floodplain management in Puget Sound. Can we have our farms and salmon too?

Puget Sound herring reproduction is not limited by the amount of suitable spawning vegetation, according to a November 2014 paper in the journal Marine Ecology. The article points to terrestrial or marine variables as likely determinants of egg loss.

The decaying seawall along Seattle’s waterfront is providing scientists with an opportunity to improve long-lost habitat for migrating salmon. It could also show the way for habitat enhancements to crumbling infrastructure worldwide. One University of Washington researcher describes the project.

A 2014 paper decribes how monitoring the energy density of key Pacific salmon species could affect the recovery of northern and southern killer whales through fisheries management.

Birds that dive for fish while wintering in the Salish Sea are more likely to be in decline than nondiving birds with less specialized diets, according to a 2014 study led by the School of Veterinary Medicine at the University of California, Davis. The study, published in the journal Conservation Biology proposes that long-term changes in the availability of forage fish are pushing the declines.

New research presented at the 2014 Salish Sea Ecosystem Conference shows that some of the greatest dangers to Puget Sound marine life come from our common, everyday activities. These pervasive sources of pollution are so woven into our lives that they are almost invisible to us, but it’s becoming impossible to ignore their effects.

A summary of environmental conditions in Pacific Canadian Waters and the broader North East Pacific in 2013.

A report from the Puget Sound Ecosystem Monitoring Program provides an overview of 2013 marine water quality and conditions in Puget Sound from comprehensive monitoring and observing programs.

The growth and survival of young salmon in streams, river deltas and floodplains are seen as crucial pieces of the salmon recovery puzzle. In part two of this two-part series, researchers at the Salish Sea Ecosystem Conference in Seattle say the complexities of the salmon life cycle require new coordination among scientists.

Scientists say Puget Sound’s salmon are dying young and point to low growth rates in the marine environment as a possible cause. In part one of this two-part series, scientists consider threats facing young salmon in the open waters of Puget Sound.

Scientists say eelgrass, an unassuming flowering plant found just off shore in Puget Sound, is vital to the health of the ecosystem. They also say the plant is declining. New and increasingly urgent efforts to restore it brought a group of researchers to the 2014 Salish Sea Ecosystem Conference.

A 2014 article in the journal Northwestern Naturalist shows how Harbor Seal tissues can reflect regional and temporal trends in contaminants in Puget Sound.

Why did all the grebes leave? Where did they go? And what does their disappearance say about the health of the Salish Sea? Seasonal declines among some regional bird species could hold important clues to the overall health of the ecosystem.

A 2014 report describes a research and monitoring study of Pigeon Guillemot conducted in and near the Nisqually Reach Aquatic Reserve. 

Harbor seals (Phoca vitulina) are the most commonly seen marine mammals in the Salish Sea and can be found throughout the region year round. They have been intensively studied within the Salish Sea and this species profile provides an overview of what is known about them. It was produced for the Encyclopedia of Puget Sound by the SeaDoc Society. 

A list of over 1800 benthic infaunal invertebrates is now available on the Encyclopedia of Puget Sound. The list was prepared as part of the Washington State Department of Ecology’s Marine Sediment Monitoring Program (MSMP).  This program, initiated in 1989, is one component of the Puget Sound Ecosystem Monitoring Program, a collaborative effort dedicated to monitoring environmental conditions in Puget Sound. 

A 2014 paper in the journal Aquatic Mammals examines coastal river otter predation on rockfish at three islands in the Salish Sea.

Approximately every two years, the SeaDoc Society prepares a list of species of concern within the Salish Sea ecosystem. The following paper found 119 species at risk and was presented as part of the proceedings of the 2014 Salish Sea Ecosystem Conference, April 30 – May 2, 2014, Seattle, Washington. 

Marine Protected Areas (MPAs) have been present in Puget Sound since the early 1900s, although most were established after the 1960s (Whitesell et al. 2008, Van Cleve 2009). By 1998 there were at least 102 intertidal and subtidal protected areas in Puget Sound, created and managed by at least 12 different agencies or organizations at the local, county, State and Federal level (Murray and Ferguson 1998).

A 2014 report describes a study of socio-cultural values associated with blueback salmon in the Quinault Indian Nation. The blueback salmon (Oncorhynchus nerka) is a unique strain of sockeye that returns primarily to the Quinault river system.

Harbor porpoise (Phocoena phocoena) are one of the most frequently sighted cetaceans in the Salish Sea. Anecdotal information, possibly supported with stranding encounter rate data, suggests that harbor porpoise may have increased in Puget Sound, or have shifted their distribution back to Puget Sound relative to earlier decades.

Harbor porpoises were once common in Puget Sound, but had all but disappeared from local waters by the 1970s. Regular and numerous anecdotal sightings in recent years show that populations of these cetaceans are now increasing and may be approaching their former status. The attached document from NOAA Fisheries describes harbor porpoise numbers and their geographic range in Puget Sound as of 2011. 

HARBOR PORPOISE (Phocoena phocoena vomerina): Washington Inland Waters Stock (NOAA Fisheries 2011)

A paper in the February 2014 journal Diseases of Aquatic Organisms examines the effect of leaf age on wasting disease in eelgrass across sites in the San Juan Archipelago. Co-author: Encyclopedia of Puget Sound topic editor Joe Gaydos. 

The Salish Sea Hydrophone Network and Orca Network are two citizen science projects dedicated to furthering our understanding of abundance, distribution, behavior, and habitat use by the endangered population of Southern Resident Killer Whales, also called orcas. The Hydrophone Network lets the public listen for orcas through their computers and phones, while the Orca Network gathers and disseminates sightings of orcas as they move between Puget Sound, the Fraser River, and the Pacific Ocean.

A January 2014 USGS report discusses approaches for measuring the effect of bivalves on nutrient availability in different regions of Puget Sound.

Ecological assessments (sometimes referred to as "conservation assessments") typically identify and evaluate the ecological attributes of an ecosystem. There is no single type of ecological assessment, but the following list includes an informal inventory of related efforts in the Salish Sea. This list does not include Ecological or Environmental Impact Assessments, which are targeted to specific land uses. This is a living document and will be updated as more information becomes available and as needs arise. 

In December 2013 NOAA released what it classifies as a "Highly Influential Scientific Assessment" of the effects of anthropogenic sound on marine mammals. The comment period on the draft assessment extends until March 13, 2014. 

A 2013 article in the journal Animal Conservation compares the effects of increasing anthropogenic noise to habitat loss for endangered fin, humpback and killer whales in the Salish Sea.

Can Puget Sound claim a new species? Ribbon seals were not previously thought to venture into the Salish Sea, but a series of sightings in Puget Sound in 2012 expands their potential range. Scientists are keeping an eye out for future sightings. 

Every two years the Puget Sound Partnership is required to assess the status of scientific research relating to the recovery of Puget Sound, in a document knows as the Biennial Science Work Plan (BSWP). Among other tasks, this entails making an inventory of all ongoing research projects in the current biennium (2011-2013). We are posting this (draft) inventory of recovery-relevant research projects here to make the information generally available.

An October 2013 report released by the Puget Sound Ecosystem Monitoring Program inventories and assesses monitoring activities of Puget Sound's ESA-listed salmon and steelhead stocks and habitats.

The Encyclopedia of Puget Sound spoke with Seattle Times reporter Lynda Mapes about the exhibit Elwha: A River Reborn, which opened at the University of Washington Burke Museum on November 23rd. The exhibit is based on the book of the same title by Mapes and photographer Steve Ringman, and tells the story of the largest dam removal in U.S. history.  

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This paper discusses the dietary habits of harbor seals (Phoca vitulina) in two estuaries in Puget Sound.

This thesis discusses the Glaucous-winged Gull (Larus glaucescens) as an indicator of ecosystem change in the Salish Sea region.

White-winged scoters (Melanitta fusca) are a species of sea duck that spend much of their time in northern marine environments. This paper investigates how dietary changes occur in response to changing availability of prey and the effect of those dietary changes on scoter condition and reproductive success, among other variables.

The 2013 State of the Sound is the Puget Sound Partnership’s third report to the Legislature on progress toward the recovery of Puget Sound by 2020. The document reports on both the status of the Partnership's recovery efforts and the status of a suite of ecosystem indicators.

This paper examines the importance of prey size to shifting scoter populations in two bays in north Puget Sound.

This paper discusses Brucella pinnipedalis infections in harbor seals (Phoca vitulina) in Washington state and transmission to humans and other wildlife. The disease poses a threat to endangered populations and may be exacerbated by organic pollutants.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

A paper presented at the European Wave and Tidal Energy Conference in Aalborg, Denmark describes the potential effects of a tidal turbine strike on an endangered Southern Resident Killer Whale in Puget Sound (SRKW). A tidal turbine is proposed for deployment in Admiralty Inlet in Island County. 

A camera on board a remotely operated vehicle scans the floor of Puget Sound capturing digital video of underwater marine life.  Selected clips of Plumose sea anemones, Pacific halibut, Pacific cod, Sea stars, and North Pacific spiny dogfish are now available for public viewing.

This page includes documents and links related to the status of Steller Sea Lion in Washington state and the Salish Sea region. 

Download presentations from the Study Panel on Ecosystem-based Management of Forage Fish held August 25, 2013 at the University of Washington’s Friday Harbor Lab, San Juan Island.

A new study provides strong evidence of substantial migration interference and increased mortality risk associated with the Hood Canal Bridge for aquatic animals, and may partially explain low early marine survival rates observed in Hood Canal steelhead populations.

Remotely Operated Vehicles (ROVs) and Autonomous Underwater Vehicles (AUVs) are underwater robotic vehicles used for a variety of ocean surveys and operations. Both are used for deep-sea observation, mapping of underwater environments, and surveys of biodiversity and water quality trends. While ROVs are tethered to the user by a cord called the umbilical, which provides power as well as control and video signals, AUVs are programmed for a specific course and then set loose, operating without a tether.

The National Marine Fisheries Service has released a Draft Biological Report proposing designation of critical habitat for yelloweye rockfish, canary rockfish, and bocaccio in the Salish Sea. Download the full report and supporting data.

The Puget Sound Marine Waters 2012 Overview from the Puget Sound Ecosystem Monitoring Program synthesizes conditions measured in 2012 and has been expanded to include observations on seabirds that rely on marine waters. Read an excerpt below, or download the full report.

The U.S. Environmental Protection Agency Region 10 and the National Marine Fisheries Service Northwest Region have released a report describing results from a series of technical workgroups about the potential effects of polybrominated diphenyl ethers (PBDEs) on Puget Sound and Southern Resident killer whales.

This paper looks at 21 years of data on estuarine demersal fish in Puget Sound, assessing changes in population after the closure of bottom trawl fisheries.

This article originally appeared in the State of Washington Bat Conservation Plan. Further information is available from the Washington Department of Fish and Wildlife.

This article originally appeared in the State of Washington Bat Conservation Plan. Further information is available from the Washington Department of Fish and Wildlife.

This article originally appeared in the State of Washington Bat Conservation Plan. Further information is available from the Washington Department of Fish and Wildlife.

This article originally appeared in the State of Washington Bat Conservation Plan. Further information is available from the Washington Department of Fish and Wildlife.

This article originally appeared in the State of Washington Bat Conservation Plan. Further information is available from the Washington Department of Fish and Wildlife.

This article originally appeared in the State of Washington Bat Conservation Plan. Further information is available from the Washington Department of Fish and Wildlife.

This article originally appeared in the State of Washington Bat Conservation Plan. Further information is available from the Washington Department of Fish and Wildlife.

This article originally appeared in the State of Washington Bat Conservation Plan. Further information is available from the Washington Department of Fish and Wildlife.

This article originally appeared in the State of Washington Bat Conservation Plan. Further information is available from the Washington Department of Fish and Wildlife.

Could recent declines in Puget Sound herring be linked to decreases in native eelgrass? Biologist Tessa Francis reports on a new study that may provide insight into the health of one of the region's most iconic forage fish.

A June 19, 2013 paper in the journal PLoS ONE hypothesizes that regional declines in Western Grebe populations may be related to decreasing numbers of forage fish. Using citizen science data from 36 years of bird counts, researchers were able to look at population trends up and down the entire West Coast, finding that abundance of grebes decreased in the Salish Sea but increased in southern California. North American population declined by 52% overall.

A new paper by Puget Sound area scientists from the SeaDoc Society and their collaborators represents the most complete summary to date of killer whale (Orcinus orca) strandings in the North Pacific. The authors analyzed stranding records dating back to 1925, obtained from scientists worldwide, finding that very few whales are stranded (an average of ten a year over the last twenty years). However, most of those strandings result in death. Only 12% of stranded whales survive.

Audio recordings of the Mazama Pocket Gopher.

Sediment health in Central Puget Sound has shown a recent steep decline, according to a report by the Washington Department of Ecology. The report compares monitoring data over a ten-year period between 1998/1999 and 2008/2009.

Seabird populations are declining worldwide. This paper looks at the impact of gillnets on bird populations.

This 2004 report looks at the status of Washington's four killer whale populations.

A master's thesis prepared at Western Washington University discusses the impact of harbor seals on fish stocks in the San Juan Islands, where the seals are a year-round predator.

A paper in the May 2013 issue of The Condor [115(2):356–365, 2013] describes a repeatable and statistically robust approach to monitoring burrow nesting seabirds in the Salish Sea and the California Current that can be applied at single- or multi-island scales. The approach can be applied to both relatively common and important members of the seabird community like the Rhinoceros Auklet and to species of conservation concern like the Tufted Puffin.

The Washington Department of Fish and Wildlife recently released a Bat Conservation Plan for the 15 species of bats found in Washington State. All but four of these species occur within the greater Puget Sound watershed1, including:

Browse a collection of shellfish photos provided by the Swinomish Tribe.

With funding from the EPA (EPA Interagency Agreement DW-13-923276-01), scientists at the Northwest Fisheries Science Center and the University of Washington used a field and quantitative modeling ‘source-transport-fate’ assessment approach to classify the vulnerability of shellfish growing areas to closures caused by watershed and marine-derived pathogens. Based on the historical prevalence of nutrient pollution, shellfish closures, and phytoplankton blooms in commercial and recreational shellfish growing area, the project focused on three nearshore sites--the Hamma Hamma (WRIA 16), Dosewallips (WRIA 16) and Samish (WRIA 3).

A new Chinook monitoring framework is designed to build cooperation among managers and policymakers working across the Puget Sound watershed. The report, prepared by an independent team of scientists and released by NOAA, includes a regionally specific, common classification system for Chinook habitats and key ecological attributes. 

The Puget Sound Recovery Implementation Technical Team has released a draft of a NOAA technical memorandum describing frameworks for adaptive management and monitoring of Chinook salmon in Puget Sound. Download the report.

Eelgrass (Zostera marina L.) is an aquatic flowering plant common in tidelands and shallow waters along much of Puget Sound’s shoreline. It is widely recognized for its important ecological functions, and provides habitat for many Puget Sound species such as herring, crab, shrimp, shellfish, waterfowl, and salmonids.

This is the executive summary from a technical report produced for the Puget Sound Nearshore Partnership on Valued Ecosystem Components (VEC). The entire document is included as a PDF with this summary.

This technical report produced for the Puget Sound Nearshore Partnership on Valued Ecosystem Components (VEC) summarizes existing knowledge of salmon use of nearshore habitats in order to help protect and restore these habitats.

This is the executive summary from a technical report produced for the Puget Sound Nearshore Partnership on Valued Ecosystem Components (VEC). The entire document is included as a PDF with this summary.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

Canadian and U.S. governments differ on special status for bocaccio in the Salish Sea. 

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

This article was originally published by the Washington Department of Fish and Wildlife as part of its annual report Threatened and Endangered Wildlife in Washington.

The Encyclopedia of Puget Sound species library now includes a list of species of concern in the Salish Sea watershed. The list was created by Joe Gaydos and Nicholas Brown of the SeaDoc Society, and was released as a paper presented as part of the Proceedings of the 2011 Salish Sea Ecosystem Conference in Vancouver, BC.

An indicator species is an organism whose presence, absence or abundance reflects a specific environmental condition. Indicator species can signal a change in the biological condition of a particular ecosystem, and thus may be used as a proxy to diagnose the health of an ecosystem. For example, plants or lichens sensitive to heavy metals or acids in precipitation may be indicators of air pollution. Indicator species can also reflect a unique set of environmental qualities or characteristics found in a specific place, such as a unique microclimate.

The Sauk-Suiattle Indian Tribe conducts annual surveys of amphibian egg masses in the Reservation Slough wetland near the Sauk River.

There are at least 28 species of rockfish in the Salish Sea, but their populations have declined in the past several decades. The proceedings from a 2011 rockfish recovery workshop in Seattle are now available.

A recent report by an independent science panel reviewed data on the effects of salmon fisheries on Southern Resident Killer Whale populations. The report was released on November 30, 2012 and was commissioned by NOAA Fisheries and Oceans Canada.

Three distinct groups of killer whales (Orcinus orca) occupy the coastal waters of the northeastern Pacific. These groups—northern and southern residents, transients, and offshores—are distinguished by diet, behavior, morphology, and other characteristics. Among these, Southern Resident and transient killer whales commonly are found in Puget Sound. Northern residents and offshore killer whales rarely enter Puget Sound (Wiles 2004, Kriete 2007), and therefore are not described in detail here.

Harbor seal numbers were severely reduced in Puget Sound during the first half of the twentieth century by a state-financed population control program. This bounty program ceased in 1960, and in 1972, harbor seals became protected under the federal Marine Mammal Protection Act and by Washington State.

The Puget Sound region has the highest densities of bald eagles in Washington. Breeding pairs initiate nesting activities in January or February. 

More than 70 bird species regularly utilize Puget Sound during some or all stages of their life histories, but only a portion of these are actively being investigated.

Fish in the family Salmonidae (salmon, trout, and charr) play potentially integral roles in the upland freshwater, nearshore and pelagic marine ecosystems and food webs of Puget Sound.

Approximately 28 species of rockfish are reported from Puget Sound, spanning a range of life-history types, habitats, and ecological niches.

Bentho-pelagic fish utilize both bottom habitats and shallower portions of the water column, often feeding in shallow water at night and moving to deeper water to form schools during the day.

Recent worldwide increases in the abundance of some jellyfish have been associated with human-caused disturbances to the environment such as eutrophication, overfishing and climate warming.

Dungeness crabs are an important resource in Puget Sound for recreational, commercial, and tribal fisheries. They utilize a variety of habitats over the course of their lives, and are vulnerable to shifts in ocean temperature and water quality.

Pinto abalone are the only abalone species found in Washington State.

Many types of bivalves, both native and non-native, flourish in Puget Sound. These species are a crucial part of the Puget Sound ecosystem and are also important for commercial fisheries.

Washington State's ocean acidification initiative began with the launch of Governer Christine Gregoire's Blue Ribbon Panel on Ocean Acidification in December 2011. The initiative is the first of its kind in the country, and a report commissioned by the Global Ocean Health Program was released in November 2012. The report is a first step towards assessing and improving the tools at hand.

GIANT PACIFIC OCTOPUS (Enteroctopus dofleini) is the largest species of octopus in the world. It is found in the northern Pacific Ocean from the northwest coast of the continental United States to Japan, including Puget Sound.

The State of Our Watersheds Report is produced by the treaty tribes of western Washington, and seeks to present a comprehensive view of 20 watersheds in the Puget Sound region and the major issues that are impacting habitat.

Protection Island, a National Wildlife Refuge in the Strait of Juan de Fuca, provides important habitat for seabirds and marine mammals.

The Puget Sound Marine Waters 2011 report is now available. The report was produced by the Puget Sound Ecosystem Monitoring Program and assesses the condition and quality of the waters of Puget Sound. 

Forage fish occupy every marine and estuarine nearshore habitat in Washington, and much of the intertidal and shallow subtidal areas of the Puget Sound Basin are used by these species for spawning habitat.

Audio recordings of rhinoceros auklets on Protection Island.

Puget Sound Stream Benthos is a data management project which monitors benthic invertebrates in streams and rivers in the Puget Sound region. The system is maintained and operated by King County and was the result of a joint effort between King, Pierce, and Snohomish Counties.

Puget Sound hosts more than 100 species of seabirds, 200 species of fish, 15 marine mammal species, hundreds of plant species, and thousands of invertebrate species. These species do not exist in isolation, but rather interact with each other in a variety of ways: they eat and are eaten by each other; they serve as vectors of disease or toxins; they are parasitic; and they compete with each other for food, habitat, and other resources.

Many consumer organisms in Puget Sound are both herbivores and detritivores. Zooplankton and benthic invertebrates that are scavengers, herbivores, or detritivores are considered jointly in this article. Some of these organisms can be predatory as well. Hundreds of invertebrates and fish species have a planktonic larval stage that eats plants and occupies the nearshore and offshore pelagic waters of Puget Sound.

A variety of animals, including invertebrates, fish, mammals, and birds, consume the suspension-feeders, filter-feeders, grazers, and detritivores that serve as a link between the primary producers and detrital pathways and the upper levels of the food web.

Fishes, birds, and mammals (including humans) serve as top-level carnivores in the Puget Sound ecosystem. With the exception of humans, these organisms have a diet that consists almost entirely of fish or other vertebrates.

Non-native species are those that do not naturally occur in an ecosystem. A non-native species is considered invasive when it is capable of aggressively establishing itself and causing environmental damage to an ecosystem. Plants, animals, and pathogens all can be invasive.