The Salish Sea Model is used to predict spatial and temporal patterns in the Salish Sea related to factors such as phytoplankton, nutrients and Dissolved Oxygen. It is a collaborative effort between the Pacific Northwest National Lab, the Washington State Department of Ecology and U.S. Environmental Protection Agency.

Toxic chemicals have been showing up in Puget Sound fish for more than a century, but consistent testing over the past 30 years has helped to reveal some unusual patterns of pollution.

In recent decades, hundreds of millions of dollars have been spent to restore habitat for Puget Sound salmon. In this article, we look at how scientists are gauging their progress. Are environmental conditions improving or getting worse? The answer may depend on where you look and who you ask.

A biennial report produced by the Governor's Salmon Recovery Office provides stories and data about salmon, habitat, and salmon recovery in Washington, including Puget Sound.

Detritus, or dying or decaying matter, is a central component of the nearshore food web in Puget Sound. This article was prepared as part of the 2015 Puget Sound Fact Book produced by the University of Washington Puget Sound Institute. 

Scientists want to know why eelgrass is on the decline in some areas of Puget Sound and not others. The answer will affect future strategies for protecting one of the ecosystem’s most critical saltwater plants.

A 2017 report from the Puget Sound Ecosystem Monitoring Program presents an overview of selected recent monitoring and research activities focused on toxic contaminants in the Salish Sea. 

The Puget Sound Ecosystem Monitoring Program (PSEMP) is an independent program established by state and federal statute to monitor environmental conditions in Puget Sound. 

Vessel traffic is increasing in the Puget Sound region. A 2017 article in the journal Aquatic Mammals looks at the potential impacts that increasing vessel disturbance may have on resident harbor seal populations and how future management decisions may need to look at variable buffer zones related to level of human activity.

As threatened Chinook populations in Puget Sound continue to lose ground, the state is looking to new strategies to reverse the trend. In the Skagit watershed, the scientists — and the fish — are among those leading the way. 

After a long struggle with pollution, Drayton Harbor has reopened to year-round commercial oyster harvesting for the first time in 22 years. Here’s how the community cleaned up its act, potentially showing the way for shellfish recovery throughout Puget Sound.

The Puget Sound ecosystem is shaped by its physical environment. This article looks at Puget Sound's geologic history as well as dynamic factors such as the flow of its rivers and currents.

A new study shows that increased populations of seals and sea lions are eating far more of Puget Sound’s threatened chinook than previously known, potentially hampering recovery efforts for both salmon and endangered killer whales. 

Eelgrass, a marine plant crucial to the success of migrating juvenile salmon and spawning Pacific herring, is stable and flourishing in Puget Sound, despite a doubling of the region’s human population and significant shoreline development over the past several decades. [Story reprinted from UW Today.]

A September 2016 report from the University of Washington Puget Sound Institute provides an overview of key products, results, and recommendations presented in three previous reports reviewing 50 projects from the first four years of the Puget Sound Marine and Nearshore Grant Program.

A 2016 article in the journal Conservation Letters makes policy recommendations to address shoreline armoring in the Salish Sea.

A September 2016 report from the University of Washington Puget Sound Institute summarizes and reviews 27 EPA-funded projects focusing on Puget Sound's marine and nearshore environments. The projects were conducted between 2011-2015 with support from the EPA's National Estuary Program.  The report is an analysis of findings on shoreline restoration and derelict net and fishing gear removal. 

Drugs like Prozac and cocaine have been showing up in the region’s salmon. But these are just some of the potentially thousands of different man-made chemicals that escape into the Salish Sea every day, from pharmaceuticals to industrial compounds. Now the race is on to identify which ones pose the greatest dangers.

A study in the journal PLOS ONE uses volunteer diver surveys to assess the impacts of sea star wasting disease in the Salish Sea. Data shows that sunflower sea stars were especially hard hit and have all but disappeared from the region. 

Scientists are testing ways to use transplanted shellfish such as mussels to monitor toxic contaminants in Puget Sound. 

Invasive species are considered a top threat to the balance of ecosystems worldwide. New discoveries of non-native green crabs in Puget Sound have highlighted that concern here at home, but invasive species can impact more than just the food web. Some introduced species can produce toxins that accumulate in shellfish or by directly infecting the human body.

The Puget Sound Ecosystem Monitoring Program released its fifth annual Marine Waters Overview this week. The report provides an assessment of marine conditions for the year 2015 and includes updates on water quality as well as status reports for select plankton, seabirds, fish and marine mammals.

Another European green crab has been spotted in Puget Sound prompting concern that the species may gain a foothold in the region. 

Sand lance in parts of British Columbia are ingesting small pieces of plastic that may be passed through the food web.

After an almost complete collapse in the 1970s, harbor porpoise populations in Puget Sound have rebounded. Scientists are celebrating the recovery of the species sometimes known as the "puffing pig." 

Concerns over the potential arrival of the European green crab have inspired a small army of volunteers. A search is underway for early signs of an invasion.

Almost twenty years ago, volunteer biologists began an intensive survey for invasive species in the marine waters of Puget Sound. In a little over a week of hunting, they found 39 such species, including 11 never before seen in the region.

The Washington Invasive Species Council evaluated more than 700 invasive species in and around Washington, considering their threats to the state’s environment, economy, and human health. They included terrestrial plants and animals, aquatic plants and animals (both freshwater and saltwater), insects and diseases. In the end, the council listed 50 “priority species” for action, including five marine animals and two marine plants, along with one virus that infects fish. 

A July 2016 report from the University of Washington Puget Sound Institute summarizes and reviews 10 EPA-funded projects focusing on Puget Sound's marine and nearshore environments. The projects were conducted between 2011-2015 with support from the EPA's National Estuary Program.  The report is an analysis of findings on invasive species, toxics, oil spill, and integrated risk assessment.

Formerly known as “Red Tide”, harmful algal blooms are a health concern for both wildlife and humans. The following is a brief review of some of these algae and their effects.

Environmental samplers may provide early detection of harmful algal blooms (HABs) in Puget Sound. This toxic algae is expected to increase as the climate changes, bringing with it new and potentially more severe outbreaks of shellfish poisonings. 

New, smaller acoustic tags will allow scientists to track steelhead migrations in Puget Sound in ways that were once impossible. Will they provide answers to the mysterious decline of these now-threatened fish? 

The Salish Sea Marine Survival Project has mobilized dozens of organizations in the U.S. and Canada to find an answer to one of the region's greatest mysteries. What is killing so many young salmon before they can return home to spawn? A series of talks at the 2016 Salish Sea Ecosystem Conference brought together some of the latest research. 

Many of Puget Sound's chinook salmon spend their entire lives in local waters and don't migrate to the open ocean. These fish tend to collect more contaminants in their bodies because of the sound's relatively high levels of pollution. 

A 2015 report from Snohomish County, King County and the Tulalip Tribes outlines protection strategies for salmon and salmon habitat within the Snohomish Basin. 

It turns out that a gooey substance known as biofilm is a big deal for Salish Sea shorebirds, providing critical food for some species. But could a proposed port expansion in Vancouver threaten this slimy resource?

The number of species of concern in the Salish Sea is growing at an average annual rate of 2.6%, according to a report published in the proceedings of the 2016 Salish Sea Ecosystem Conference in Vancouver, B.C.

The number of species of concern in the Salish Sea is growing at an average annual rate of 2.6%, according to a report published in the proceedings of the 2016 Salish Sea Ecosystem Conference in Vancouver, B.C.

Bulkhead removal is becoming an attractive option for many shoreline property owners as awareness spreads of their geological and ecological impacts, and as aging bulkheads come up for replacement. New state guidelines provide alternatives to hard armor.

For more than a hundred years, property owners have seen shoreline erosion as the enemy. But it turns out that in many cases erosion is actually a good thing — crucial, according to scientists — because it provides the sand and gravel needed for healthy beaches.

A significant number of Puget Sound property owners have been altering their shorelines without required permits. A new report suggests that state and local regulators should increase enforcement and make penalties more costly for violators.

By removing bulkheads where they can, property owners are improving shoreline habitat, one piece at a time. Officials from county and nonprofit groups have been offering assistance and finding new ways to connect with property owners.

Where shoreline bulkheads remain in place, the loss of spawning habitat used by surf smelt is likely to reach 80 percent.

Rising sea levels are expected to exacerbate habitat loss caused by bulkheads, according to studies in the San Juan Islands.

The removal of shoreline armoring in Puget Sound has become a priority for state and federal agencies, but until recently there have been relatively few scientific studies of armoring's local impact. New research looks at the pronounced biological and ecological effects of these common shoreline structures, especially for tiny beach-dwelling creatures that make up the base of the food web.

A 2016 technical report from the Washington Department of Fish and Wildlife and the Cascadia Research Collective details the decline of the harbor porpoise in Puget Sound in the 1970s and reports that species numbers have increased over the past twenty years likely due to outside immigration.

A 2016 paper in Environmental Pollution identifies dozens of pharmaceuticals and other compounds that are accumulating in Puget Sound fish such as salmon.

An algal bloom is a rapid increase or accumulation in the population of algae in a water system. While most are innocuous, there are a small number of algae species that produce harmful toxins to humans and animals.

A 2016 paper in the journal Oecologia describes how individual herring populations in Puget Sound exhibit a portfolio effect, collectively influencing and stabilizing the region’s population as a whole.