Estuarine habitat

An estuarine habitat occurs where salty water from the ocean mixes with freshwater from the land. The water is generally partially enclosed or cut off from the ocean, and may consist of channels, sloughs, and mud and sand flats. River mouths, lagoons, and bays often constitute estuarine habitat. Within any estuary, there is a salinity gradient that determines to a large extent what plants and animals are present. In Puget Sound, it is difficult to differentiate between marine habitat and estuarine habitat, since salinity fluctuates with the seasons and tides. The Department of Natural Resources established a geographical boundary in 1990, drawing a line from Green Point, on Fidalgo Island, to Lawrence Point, on Orcas, and calling all waters to the east estuarine habitat, and water to the west marine (with some exceptions: Dungeness Bay, Sequim Bay, and various coastal estuaries such as Grays Harbor and Willapa Bay).

Sources:

http://www.dnr.wa.gov/Publications/amp_nh_marine_class.pdf

http://www.ecy.wa.gov/programs/sea/shellfishcommittee/mtg_may08/Salmon_Recovery_Report.pdf

Tidal marsh at the Nisqually National Wildlife Refuge in Puget Sound. Photo courtesy of USFWS.

OVERVIEW

Types of estuaries in Puget Sound

An estuary is a place where saltwater from the ocean mixes with freshwater from rivers and streams. Technically, this defines all of Puget Sound, but scientists have identified several types of "sub-estuaries" within the water body. These include pocket estuaries (or embayments), tidally-influenced rivers and wetlands and other areas near the shoreline connected with freshwater sources. This summary provides descriptions of these estuaries from the Washington State Department of Natural Resources, the Puget Sound Nearshore Partnership and others.  

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A large river delta in Puget Sound. Photo courtesy of Puget Sound Nearshore Ecosystem Restoration Project
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Predicted annual average Δ in surface temperature and salinity over (a) the entire Salish Sea domain, as well as (b) in the nearshore intertidal regions of the Snohomish River estuary (see Khangaonkar et al. 2019 for details).  Image courtesy of Journal of Geophysical Research: Oceans.
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Spring Chinook Salmon. Photo: Michael Humling, US Fish & Wildlife Service
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Image describing low oxygen "dead zones"; image courtesy of NOAA
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WDFW biologists sorting and measuring fish from PSEMP's index sites in the Duwamish River and near the Seattle Waterfront. Photo: WDFW
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Salmon smolts. Photo courtesy of Governor's Salmon Recovery Office
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Fir Island Farms habitat restoration monitoring in Skagit County. Project provides rearing habitat for young threatened Chinook salmon along with other wildlife. Copyright: Bob Friel
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Puget Sound basins. The oceanographer’s definition of Puget Sound is limited to the following marine basins: Hood Canal, Main Basin (Admiralty Inlet and the Central Basin), South Basin, and Whidbey Basin. Map: Kris Symer. Data source: WDFW.
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Puget Sound's physical environment

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report cover: Synthesis of 2011-2014 results and key recommendations for future recovery efforts: Final analysis report
12/6/2016

Puget Sound marine and nearshore grant program results, final analysis report

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Fluoxetine hydrochloride. Photo: Meg (CC BY-NC-ND 2.0) https://www.flickr.com/photos/disowned/1125134972
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Concerns rise over rogue chemicals in the environment

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Toxic algal blooms are sometimes associated with invasive plankton. Photo: Eutrophication&Hypoxia (CC BY 2.0) https://www.flickr.com/photos/48722974@N07/5120831456
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Salish Sea snapshots: Invasive species and human health

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Puget Sound Marine Waters 2015 report cover
9/27/2016

2015 Puget Sound Marine Waters Overview

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Carcinus maenas. Photo: Brent Wilson (CC BY-NC-SA 2.0) https://www.flickr.com/photos/59048895@N06/5409329320/
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Second invasive green crab found in Puget Sound

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Rhinoceros Auklet carrying sand lance. Photo by Peter Hodum.
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Harbor Porpoise (Phocoena phocoena). Bellingham Bay, WA. Photo: Andrew Reding (CC BY-NC-ND 2.0) https://www.flickr.com/photos/seaotter/9509722373/
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The return of the pig

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Carcinus maenas. Photo: Brent Wilson (CC BY-NC-SA 2.0) https://www.flickr.com/photos/59048895@N06/5409329320/
8/2/2016

Green crabs could impair Puget Sound shellfish operations

Concerns over the potential arrival of the European green crab have inspired a small army of volunteers. A search is underway for early signs of an invasion.

The orange-striped Asian anemone (Diadumene lineata) was commonly observed in Shelton during the 1998 Puget Sound Expedition. Photo: James Koh (CC BY-NC-SA 2.0) https://www.flickr.com/photos/jameskoh/3835201631/
8/2/2016

Building a baseline of invasive species in Puget Sound

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A clump of cordgrass (Spartina alterniflora) Photo: USDA-NRCS PLANTS Database
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Invasive marine species: Washington state priorities

The Washington Invasive Species Council evaluated more than 700 invasive species in and around Washington, considering their threats to the state’s environment, economy, and human health. They included terrestrial plants and animals, aquatic plants and animals (both freshwater and saltwater), insects and diseases. In the end, the council listed 50 “priority species” for action, including five marine animals and two marine plants, along with one virus that infects fish. 

report cover: Analysis of invasive species, toxics, oil spill, and integrated risk assessment findings
8/1/2016

A review of Puget Sound marine and nearshore grant program results, Part 2

A July 2016 report from the University of Washington Puget Sound Institute summarizes and reviews 10 EPA-funded projects focusing on Puget Sound's marine and nearshore environments. The projects were conducted between 2011-2015 with support from the EPA's National Estuary Program.  The report is an analysis of findings on invasive species, toxics, oil spill, and integrated risk assessment.

Due to the 'Red Tide' misnomer, blooms of red-colored algae, like this Noctiluca sp. (a dinoflagellate) seen here in Eastsound, Washington (July 2016), can cause undue public concern about harmful algal blooms. Photo: Jordan Cole
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Harmful algal blooms in the Salish Sea

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Photogrammetry image of an adult female Southern Resident (J16) as she’s about to surface with her youngest calf, born earlier in 2015, alongside. Photo: NOAA Fisheries, Vancouver Aquarium
7/20/2016

Killer whale miscarriages linked to low food supply

New techniques for studying orcas have been credited with breakthroughs in reproductive and developmental research. Drones and hormone-sniffing dogs are helping scientists connect declines in food supply with low birth rates and poor health. Update: The research described in this 2016 article has now been published in the 6/29/17 issue of the journal PLOS ONE. 

Monitoring devices deployed by NOAA for detecting harmful algal blooms. Photo by Rachael Mueller.
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Salish Sea snapshots: Detecting harmful algal blooms

Environmental samplers may provide early detection of harmful algal blooms (HABs) in Puget Sound. This toxic algae is expected to increase as the climate changes, bringing with it new and potentially more severe outbreaks of shellfish poisonings. 

A steelhead (Oncorhynchus mykiss) in the Cascade River, WA, 2014. Photo: © Morgan Bond http://www.morganhbond.com/
6/30/2016

Advances in technology help researchers evaluate threatened Puget Sound steelhead

New, smaller acoustic tags will allow scientists to track steelhead migrations in Puget Sound in ways that were once impossible. Will they provide answers to the mysterious decline of these now-threatened fish? 

Key hypotheses include bottom-up and top-down processes and additional factors such as toxics, disease, and competition.  Graphic: Michael Schmidt, Salish Sea Marine Survival Project
6/29/2016

Mystery remains in deaths of young salmon

The Salish Sea Marine Survival Project has mobilized dozens of organizations in the U.S. and Canada to find an answer to one of the region's greatest mysteries. What is killing so many young salmon before they can return home to spawn? A series of talks at the 2016 Salish Sea Ecosystem Conference brought together some of the latest research. 

Chinook salmon (Oncorhynchus tshawytscha). Photo: WDFW
6/17/2016

Contaminants higher in resident 'blackmouth' Chinook

Many of Puget Sound's Chinook salmon spend their entire lives in local waters and don't migrate to the open ocean. These fish tend to collect more contaminants in their bodies because of the sound's relatively high levels of pollution. 

Puget Sound's orcas are among the most contaminated marine mammals in the world. Photo: Minette Layne (CC-BY-2.0) https://en.wikipedia.org/wiki/Killer_whale#/media/File:Orca_porpoising.jpg
5/18/2016

New theory rethinks spread of PCBs and other toxics in Puget Sound

Researchers are proposing a shift in thinking about how some of the region’s most damaging pollutants enter Puget Sound species like herring, salmon and orcas.

The Tufted Puffin is among 125 species of concern found in the Salish Sea. Photo: Peter Hodum.
4/20/2016

The growing number of species of concern in the Salish Sea suggests ecosystem decay is outpacing recovery

The number of species of concern in the Salish Sea is growing at an average annual rate of 2.6%, according to a report published in the proceedings of the 2016 Salish Sea Ecosystem Conference in Vancouver, B.C.

Black Scoter (Melanitta negra), one of seven new birds added to a Salish Sea-wide list of species of concern. Photo courtesy of USGS.
4/16/2016

Conference snapshot: The number of species of concern in the Salish Sea is growing steadily

The number of species of concern in the Salish Sea is growing at an average annual rate of 2.6%, according to a report published in the proceedings of the 2016 Salish Sea Ecosystem Conference in Vancouver, B.C.

Close up of Phocoena phocoena. Photo: AVampireTear (CC BY-SA 3.0) https://commons.wikimedia.org/wiki/File:Daan_Close_Up.PNG
3/8/2016

Disappearance and return of harbor porpoise to Puget Sound

A 2016 technical report from the Washington Department of Fish and Wildlife and the Cascadia Research Collective details the decline of the harbor porpoise in Puget Sound in the 1970s and reports that species numbers have increased over the past twenty years likely due to outside immigration.

Salmon. Photo: Dan Hershman (CC BY-NC 2.0) https://www.flickr.com/photos/hershman/497293505
2/29/2016

Contaminants of emerging concern in a large temperate estuary

A 2016 paper in Environmental Pollution identifies dozens of pharmaceuticals and other compounds that are accumulating in Puget Sound fish such as salmon.

Young adult herring from Puget Sound.Margaret Siple/University of Washington
2/25/2016

Population diversity in Pacific herring of the Puget Sound

A 2016 paper in the journal Oecologia describes how individual herring populations in Puget Sound exhibit a portfolio effect, collectively influencing and stabilizing the region’s population as a whole. 

Puget Sound. Photo: S.N. Johnson-Roehr (CC BY-NC 2.0) https://www.flickr.com/photos/snjr22/4095840433
2/18/2016

Water and nutrient circulation in Puget Sound

Complex physical processes such as hydrology, nutrient cycling, and sediment transport are linked to water circulation patterns in Puget Sound. 

Ballard Locks from the air. Photo: Jeff Wilcox (CC BY-NC 2.0) https://www.flickr.com/photos/jeffwilcox/4805933588
2/18/2016

Will Ballard Locks withstand a major earthquake?

For close to 100 years, Seattle's Ballard Locks has been one of the region's busiest waterways, drawing major boat traffic along with millions of tourists. But as it prepares to celebrate its centennial, the aged structure is also drawing the concern of engineers. They worry that an earthquake could cause the locks to fail, draining massive amounts of water from Lake Washington and Lake Union. In some scenarios, the two lakes could drop by as much as 20 feet, stranding boats, disabling bridges and causing big problems for salmon restoration.

Waves crashing on the Puget Sound Photo: MikeySkatie (CC BY-SA 2.0) https://www.flickr.com/photos/mikeyskatie/5473869676
2/17/2016

Climate and ocean processes

This overview discusses the processes that control ocean and climate characteristics. Topics include atmospheric forcing, precipitation patterns, oscillation trends, coastal upwelling, and climate change.

Stormwater flowing into catch basin carries contaminants to our waterways. Photo: Ben McLeod (CC BY-NC-SA 2.0) https://www.flickr.com/photos/benmcleod/420158390
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Stormwater facts

Runoff from rain and melting snow is one of the leading causes of pollution in Puget Sound. Here are selected facts related to stormwater, its prevalence, how it affects the Puget Sound ecosystem, and its environmental and economic impacts.

Steelhead (Oncorhynchus mykiss). Photo: Eric Engbretson, U.S. Fish and Wildlife Service
1/13/2016

Are diseases playing a role in salmon decline?

Chinook, coho and steelhead populations in Puget Sound have declined dramatically over the past 30 years. In some cases, counts of fish returning to the rivers are just a tenth what they were in the 1980s. While many possible causes of this decline are under consideration, some researchers are focusing on the combined effects of predators and disease. This article continues our coverage of the ecological impacts of disease in Puget Sound.

Mist from the breath of killer whales is collected at the end of a long pole then tested for dozens of different types of bacteria. Photo: Pete Schroeder
1/13/2016

Concerns rise over potential impacts of disease on the ecosystem

From orcas to starfish to humans, disease affects every living creature in the ecosystem. Scientists are increasingly alarmed by its potential to devastate already compromised populations of species in Puget Sound.  

Fig 1. The six projects assessed are located on both sides of the Canadian / United States border, which bisects the Salish Sea and its watershed.
1/4/2016

Evaluating threats in multinational marine ecosystems: A Coast Salish first nations and tribal perspective

A 2015 paper in the journal PLoS ONE identifies ongoing and proposed energy-related development projects that will increase marine vessel traffic in the Salish Sea. It evaluates the threats each project poses to natural resources important to Coast Salish first nations and tribes.

Birch Bay. Photo by Jeff Rice
12/21/2015

Birch Bay characterization and watershed planning pilot – taking action

A 2015 report from the Whatcom Conservation District and Whatcom County describes a pilot watershed characterization study focusing on the Terrell Creek and Birch Bay areas. The report and related appendices are available for download. 

report cover: Analysis of  Effective Regulation and Stewardship Findings
12/17/2015

A review of Puget Sound marine and nearshore grant program results, Part 1

A 2015 report from the University of Washington Puget Sound Institute summarizes and reviews 14 EPA-funded projects focusing on Puget Sound's marine and nearshore environments. The projects were conducted between 2011-2015 with support from the EPA's National Estuary Program.

Report cover for State of Knowledge: Climate Change in Puget Sound
11/16/2015

State of Knowledge: Climate Change in Puget Sound

A 2015 report from the University of Washington provides the most comprehensive assessment to date of the expected impacts of climate change on the Puget Sound region.

Lower Duwamish Waterway dredging on Superfund site. Photo: Gary Dean Austin (CC BY-SA 2.0) https://www.flickr.com/photos/49648789@N08/17069420399/
10/5/2015

Persistent contaminants in Puget Sound: Overcoming a toxic legacy

The Lower Duwamish Waterway in Puget Sound was designated a Superfund cleanup site in 2001. Its legacy of contamination predates World War II and the waterway continues to pollute Puget Sound through stormwater runoff.

Puget Sound Fact Book report cover
10/2/2015

Puget Sound Fact Book

The Puget Sound Fact Book brings together statistics and other information about the health and makeup of the Puget Sound ecosystem. Areas of focus include climate change, geography, water quality, habitats, human dimensions and regional species. The fact book was prepared for the Encyclopedia of Puget Sound with funding from the Environmental Protection Agency and the Puget Sound Partnership.

Fishes of the Salish Sea report cover
9/30/2015

Fishes of the Salish Sea: a compilation and distribution analysis

A 2015 NOAA report creates an updated and comprehensive list of the fishes of the Salish Sea. 

Harbor porpoise surfacing. Photo: Erin D'Agnese, WDFW
9/25/2015

Harbor porpoise in the Salish Sea

In the 1940s, harbor porpoise were among the most frequently sighted cetaceans in Puget Sound, but by the early 1970s they had all but disappeared from local waters. Their numbers have since increased, but they remain a Species of Concern in the state of Washington. This in-depth profile looks at harbor porpoise in the Salish Sea, and was prepared by the SeaDoc Society for inclusion in the Encyclopedia of Puget Sound. 

Puget Sound marine waters 2014 report cover
9/13/2015

2014 Puget Sound Marine Waters Overview

A report from NOAA and the Puget Sound Ecosystem Monitoring Program provides an overview of 2014 marine water quality and conditions in Puget Sound from comprehensive monitoring and observing programs.

2014 state of salmon in watersheds report cover
9/13/2015

2014 state of salmon in watersheds executive summary

This report documents how Washingtonians have responded to the challenges of protecting and restoring salmon and steelhead to healthy status. It also serves as a tool to summarize achievements, track salmon recovery progress through common indicators, and identify data gaps that need to be filled.

Glaucus-winged gull. Image courtesy of USGS.
9/2/2015

Evidence shows that gulls are shifting their diets from marine to terrestrial sources

A 2015 article in the journal Environmental Science and Technology presents additional isotopic evidence that glaucus-winged gulls in the Salish Sea are shifting their diets from marine to terrestrial sources due to human impacts. Scientists hypothesize that declining forage fish may be the cause. 

Harbor porpoise. Photo courtesy of the National Park Service.
8/5/2015

Increased harbor porpoise mortality in the Pacific Northwest, USA: understanding when higher levels may be normal

A 2015 paper in the journal Diseases of Aquatic Organisms examines potential causes of increased harbor porpoise strandings in Washington and Oregon.  

Figure 31-1. Red circles show the locations of 79 stations sampled during the water properties survey in April, June and September/October (page 147).
7/27/2015

State of the physical, biological and selected fishery resources of Pacific Canadian marine ecosystems in 2014

An annual State of the Pacific Ocean meeting is held to review the physical, biological and selected fishery resources and present the results of the most recent year’s monitoring in the context of previous observations and expected future conditions. The workshop to review conditions during 2014 took place at the Institute of Ocean Sciences, Sidney, B.C. on March 10 and 11, 2015, with over 100 participants both in person and via webinar.

2012 State of Salmon in Watersheds Executive Summary report cover
7/21/2015

2012 state of salmon in watersheds executive summary

Salmon recovery demands both dedication among people with different interests, and sustained resources. This biennial report tells the story of the progress made to date and the challenges ahead.

Fisherman cleaning and filleting a fish. Photo courtesy of NOAA.
7/7/2015

Subsistence fishing in a 21st century capitalist society: From commodity to gift

A 2015 paper in the journal Ecological Economics evaluated “personal use” and subsistence use of seafood among commercial operators in Washington and California, as well as the extent, range, and species diversity of noncommercial wild ocean seafood subsistence harvests. 

Cover image for Limnology and Oceanography volume 60
6/18/2015

An inland sea high nitrate-low chlorophyll (HNLC) region with naturally high pCO2

A 2015 paper in the journal Limnology and Oceanography presents new data on ocean acidification in the Salish Sea.

6/7/2015

Dissolved oxygen and hypoxia in Puget Sound

Hypoxia, defined as dissolved oxygen (DO) concentrations less than 2 mg / L, has become widespread throughout estuaries and semi-enclosed seas throughout the world (Diaz 2001). 

Juvenile coho salmon. Photo courtesy of NOAA.
5/28/2015

Spatial and temporal patterns in smolt survival of wild and hatchery coho salmon in the Salish Sea

Scientists say low marine survival rates threaten Puget Sound coho salmon populations. A 2015 article in the journal Marine and Coastal Fisheries reports that wild cohos in the Salish Sea had higher smolt survival rates over a 30 year period than hatchery coho salmon. Smolt survival in the Strait of Georgia during that time declined faster than it did in Puget Sound. 

Sample map of “Year of Emergence”, depicting where and when there is projected to be noticeable differences in number of days per year with daily maximum temperature exceeding 90°F (32.2°C) compared to 1950-1999, for a moderate rate of climate change, high emissions scenario and high management sensitivity, according to the BCSD5 climate data source.
5/19/2015

Time of emergence of climate change signals in the Puget Sound Basin

A December 2014 report from the University of Washington examines when and where climate change impacts will occur in the Puget Sound watershed.

An example of a search query for climate impacts in King County, WA
5/19/2015

Online resource identifies 'time of emergence' for Puget Sound climate impacts

When and where will we see the impacts of climate change in Puget Sound? A web-based tool factors in dozens of site-specific variables for watersheds throughout the Pacific Northwest. The resource was developed by the University of Washington Climate Impacts Group with support from the EPA, the US Army Corps of Engineers and the Center for Data Science, University of Washington-Tacoma.

Jellyfish surround a floatplane pontoon. Photo courtesy of Washington Department of Ecology.
5/11/2015

Forty years of change in forage fish and jellyfish abundance across greater Puget Sound, Washington (USA): anthropogenic and climate associations

A 2015 paper in the Marine Ecology Press Series reports a trend toward more jellyfish and less of some forage fish species in Puget Sound. The paper analyzes more than 40 years of state data, and assesses potential human causes for the shift.

Report cover
5/7/2015

State of Washington status report for the tufted puffin

A 2015 report from the Washington Department of Fish and Wildlife reviews information relevant to the status of the tufted puffin in Washington and addresses factors affecting this status. 

Harbor seal photographed by Andreas Trepte. Available through a Creative Commons Attribution Share Alike 2.5 license.
5/5/2015

Foraging differences between male and female harbor seals present challenges for fisheries management

A 2015 article published in the Marine Ecology Progress Series identifies intraspecific differences in diet between harbor seals in the Salish Sea, suggesting implications for marine reserve management. 

Report cover
4/22/2015

Status and trends for seagrasses in Puget Sound from 2010-2013

A 2015 report from the Washington State Department of Natural Resources summarizes the status and trends for native eelgrass and other seagrasses in Puget Sound from 2010-2013.

Book cover for The Salish Sea: Jewel of the Pacific Northwest
4/20/2015

New book focuses on the natural history of the Salish Sea

The Salish Sea: Jewel of the Pacific Northwest brings together more than 230 extraordinary images of the Salish Sea. But don't call it a coffee table book. Its lush photos are backed by a serious scientific perspective on this complex and fragile ecosystem.

A great blue heron catching a fish in an estuary. Photo courtesy of NOAA
3/11/2015

Top–down control by great blue herons regulates seagrass-associated epifauna

A 2015 paper in Oikos Journal examines the impacts of great blue heron predation on species diversity in eelgrass meadows in British Columbia. 

3/9/2015

Framework for prioritizing monitoring of CECs in the Pacific Northwest

The Puget Sound Ecosystem Monitoring Program (PSEMP), along with partners from the US EPA Columbia River Program and USGS Oregon Water Science Center, have developed a framework for prioritizing monitoring of Contaminants of Emerging Concern (CECs) in the Pacific Northwest.

Harbor porpoise. Photo courtesy of the National Park Service.
3/3/2015

Living in the fast lane: rapid development of the locomotor muscle in immature harbor porpoises (Phocoena phocoena)

A study in the Journal of Comparative Physiology shows that muscle development necessary for diving can take several years to mature in harbor porpoises. Scientists argue that this may make immature harbor porpoises more vulnerable than adults to impacts from boat traffic or other disturbances. 

18-year-old L92 Crewser male resident orca, born 1995, and kayaker. Photo: Andrew Reding (CC BY-NC-ND 2.0) https://www.flickr.com/photos/seaotter/9259744196/
1/21/2015

Stimulus-dependent response to disturbance affecting the activity of killer whales

A 2015 paper presented to the International Whaling Commission compares the impacts of kayaks and powerboats on killer whale populations.

Cirratulus spectabilis (Phylum Annelida, Class Polychaeta, Family Cirratulidae) – This polychaete annelid is known as a “sphaghetti worm” because of the tangled mass of branchia (gills) emerging from the segments. These are used for respiration. The number and placement of these are distinctive for each species in this family. (Photo: Maggie Dutch)
1/14/2015

Taxonomic guides to benthic invertebrates of Puget Sound

A 2014 Washington State Department of Ecology report provides a taxonomic guide for Puget Sound sediment-dwelling invertebrates (benthos). Surveys of these species are used to monitor the health of the foodweb, as well as levels of toxic contaminants in the seafloor.

Harbor porpoise (Phocoena phocoena). Photo courtesy of National Park Service.
1/7/2015

Population structure and intergeneric hybridization in harbour porpoises Phocoena phocoena in British Columbia, Canada

A 2014 paper in Endangered Species Research suggests that harbour porpoises inhabiting coastal waters of southern British Columbia constitute a single genetic population, which should be reflected in management decisions.

12/17/2014

Development of a stormwater retrofit plan for Water Resources Inventory Area (WRIA) 9: Comprehensive needs and cost assessment and extrapolation to Puget Sound

A 2014 King County report projects the capital and maintenance costs of the stormwater treatment facilities that would be needed, within WRIA 9 and the Puget Sound region, to fully comply with the Clean Water Act. 

Olympia oysters. Photo: VIUDeepBay (CC BY 2.0) https://www.flickr.com/photos/viucsr/5778358466
12/11/2014

Gifts from the sea: shellfish as an ecosystem service

The region's famed mollusks provide more than just money and jobs. They offer what are called ecosystem services—a wide variety of benefits that humans derive from an ecosystem.

Aquatic Ecosystem Health & Management
12/9/2014

Health of the Salish Sea as measured using transboundary ecosystem indicators

A December 2014 paper in the journal Aquatic Ecosystem Health & Management describes a project to identify transboundary ecosystem indicators for the Salish Sea. 

Clam gardens, while all being characterized by a level terrace behind a rock wall in the lower intertidal, are diverse in their shapes and sizes. Photo: Amy S. Groesbeck.Clam gardens, while all being characterized by a level terrace behind a rock wall in the lower intertidal, are diverse in their shapes and sizes.
12/5/2014

Ancient clam gardens of the Northwest Coast of North America

Northwest Coast First Peoples made clam garden terraces to expand ideal clam habitat at tidal heights that provided optimal conditions for clam growth and survival, therefore enhancing food production and increasing food security.

Purple sea star. Photo by brewbooks. Creative commons Attribution-ShareAlike 2.0 Generic (CC BY-SA 2.0).
12/3/2014

Virus associated with sea-star wasting disease

A virus is the likely cause of sea-star die-offs on the Northeast Pacific Coast and in Puget Sound, according to a November 2014 paper published in the Proceedings of the National Academy of Sciences.

Z. japonica at Padilla Bay in Puget Sound. Photo by Jeff Rice.
11/24/2014

Ecological effect of a nonnative seagrass spreading in the Northeast Pacific: A review of Zostera japonica

A 2014 literature review in the journal Ocean & Coastal Management suggests negative effects of nonnative eelgrass on the native species. 

Southern resident orcas. Photo: NOAA http://www.nmfs.noaa.gov/pr/species/mammals/cetaceans/killerwhale_photos.htm
10/28/2014

Seeking higher calories for Puget Sound killer whales

A 2014 paper decribes how monitoring the energy density of key Pacific salmon species could affect the recovery of northern and southern killer whales through fisheries management.

Birds that dive and forage for fish in the Salish Sea, including this western grebe, are 11 times more likely to experience population declines than other birds in the area, a UC Davis study found. Photo courtesy of UC Davis. All rights reserved.
10/16/2014

Assessing ecological correlates of marine bird declines to inform marine conservation

Birds that dive for fish while wintering in the Salish Sea are more likely to be in decline than nondiving birds with less specialized diets, according to a 2014 study led by the School of Veterinary Medicine at the University of California, Davis. The study, published in the journal Conservation Biology proposes that long-term changes in the availability of forage fish are pushing the declines.

Stormwater flowing into catch basin carries contaminants to our waterways. Photo: Ben McLeod (CC BY-NC-SA 2.0) https://www.flickr.com/photos/benmcleod/420158390
10/7/2014

Common, everyday activities now the leading sources of toxics in Puget Sound

New research presented at the 2014 Salish Sea Ecosystem Conference shows that some of the greatest dangers to Puget Sound marine life come from our common, everyday activities. These pervasive sources of pollution are so woven into our lives that they are almost invisible to us, but it’s becoming impossible to ignore their effects.

2013 Puget Sound Marine Waters Overview
9/11/2014

2013 Puget Sound Marine Waters Overview

A report from the Puget Sound Ecosystem Monitoring Program provides an overview of 2013 marine water quality and conditions in Puget Sound from comprehensive monitoring and observing programs.

Nisqually Reserve Fish Sampling March 2012. Photo: Michael Grilliot, DNR (CC BY-NC-ND 2.0) https://www.flickr.com/photos/wastatednr/6834386824
9/9/2014

No salmon left behind: The importance of early growth and freshwater restoration

The growth and survival of young salmon in streams, river deltas and floodplains are seen as crucial pieces of the salmon recovery puzzle. In part two of this two-part series, researchers at the Salish Sea Ecosystem Conference in Seattle say the complexities of the salmon life cycle require new coordination among scientists.

Chinook Salmon (juvenile) Photo Credit: Roger Tabor/USFWS. https://www.flickr.com/photos/usfwspacific/6093338474
8/28/2014

What is killing young salmon in Puget Sound?

Scientists say Puget Sound’s salmon are dying young and point to low growth rates in the marine environment as a possible cause. In part one of this two-part series, scientists consider threats facing young salmon in the open waters of Puget Sound.

Inside the Eelgrass beds. Photo: Eric Heupel (CC BY-NC 2.0) https://www.flickr.com/photos/eclectic-echoes/7654885752
8/8/2014

Shedding new light on eelgrass recovery

Scientists say eelgrass, an unassuming flowering plant found just off shore in Puget Sound, is vital to the health of the ecosystem. They also say the plant is declining. New and increasingly urgent efforts to restore it brought a group of researchers to the 2014 Salish Sea Ecosystem Conference.

Harbor seal pup. Photo courtesy of NOAA.
8/6/2014

Age, region, and temporal patterns of trace elements measured in stranded harbor seals (Phoca vitulina richardii) from Washington inland waters

A 2014 article in the journal Northwestern Naturalist shows how Harbor Seal tissues can reflect regional and temporal trends in contaminants in Puget Sound.

Western grebe. Public Pier, Blaine, WA. Photo: Andrew Reding https://www.flickr.com/photos/seaotter/10298390254
7/22/2014

Declines in marine birds trouble scientists

Why did all the grebes leave? Where did they go? And what does their disappearance say about the health of the Salish Sea? Seasonal declines among some regional bird species could hold important clues to the overall health of the ecosystem.

Pigeon Guillemots at Zangle Cove. Photo by Bobbie Moody.
7/17/2014

Pigeon Guillemot Foraging and Breeding Survey in and Near the Nisqually Reach Aquatic Reserve

A 2014 report describes a research and monitoring study of Pigeon Guillemot conducted in and near the Nisqually Reach Aquatic Reserve. 

Coastal Management journal cover
7/3/2014

Collaboration within the Puget Sound marine and nearshore science network

A study published in the journal Coastal Management generates a broad description of the collaborative network among marine and nearshore researchers in Puget Sound and identifies incentives and barriers to collaboration.

Coastal Management journal cover
7/1/2014

Special issue of Coastal Management focuses on social sciences in Puget Sound recovery

The July 2014 issue of the journal Coastal Management focuses on the role of social sciences in Puget Sound ecosystem recovery. Articles range from political ecology to the development of human wellbeing indicators and directly address current Puget Sound restoration efforts. Guest editors include Encyclopedia of Puget Sound topic editor Kelly Biedenweg and Puget Sound Science Panel co-chair Katharine Wellman. The journal is co-edited by Patrick Christie of our editorial board. Extended abstracts of the articles will be available on these pages in coming weeks.

Harbor seal vocalizing on rock. Credit: G.E. Davis
6/23/2014

Harbor seal species profile

Harbor seals (Phoca vitulina) are the most commonly seen marine mammals in the Salish Sea and can be found throughout the region year round. They have been intensively studied within the Salish Sea and this species profile provides an overview of what is known about them. It was produced for the Encyclopedia of Puget Sound by the SeaDoc Society. 

Amphipholis squamata (Phylum Echinodermata, Class Ophiuroidea) – This is a brittle star, commonly known as the “brooding snake star”. (Sandra Weakland, Brooke McIntyre photo)
6/17/2014

Benthic Invertebrates of Puget Sound

A list of over 1800 benthic infaunal invertebrates is now available on the Encyclopedia of Puget Sound. The list was prepared as part of the Washington State Department of Ecology’s Marine Sediment Monitoring Program (MSMP).  This program, initiated in 1989, is one component of the Puget Sound Ecosystem Monitoring Program, a collaborative effort dedicated to monitoring environmental conditions in Puget Sound. 

The Canary Rockfish is one of the 119 species listed in a new paper from the SeaDoc Society as "at risk." Photo by Tippy Jackson, courtesy of NOAA.
5/22/2014

Species of Concern within the Salish Sea nearly double between 2002 and 2013

Approximately every two years, the SeaDoc Society prepares a list of species of concern within the Salish Sea ecosystem. The following paper found 119 species at risk and was presented as part of the proceedings of the 2014 Salish Sea Ecosystem Conference, April 30 – May 2, 2014, Seattle, Washington. 

5/21/2014

Regional investigations into the effects of CECs

Several research groups in the region are investigating biological markers and/or impacts of Contaminant of Emerging Concern (CEC) exposure in different organisms.  An abstract describing each study is included below.  Also included are links or contact details for further information about each project.

5/21/2014

Regional monitoring of CECs in the Salish Sea

Several studies have been performed to determine the occurrence of selected Contaminants of Emerging Concern (CECs) in the environment.

The view from the shore of Brackett's Landing, a Marine Protected Area in Puget Sound. Photo by Jeff Rice. Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
5/15/2014

Marine Protected Areas in Puget Sound

Marine Protected Areas (MPAs) have been present in Puget Sound since the early 1900s, although most were established after the 1960s. By 1998 there were at least 102 intertidal and subtidal protected areas in Puget Sound, created and managed by at least 12 different agencies or organizations at the local, county, State and Federal level.

Eelgrass in Dumas Bay, Central Puget Sound 2013. Photo courtesy of DNR.
5/6/2014

Nitrogen as an Eelgrass Stressor in Puget Sound

Although overall eelgrass abundance appears to be stable in Puget Sound, some local areas are showing declines. A 2014 report from the Washington State Department of Natural Resources looks at the potential impact of increased nitrogen on eelgrass health.   

Blue dye is used to illustrate currents in the Puget Sound Model at the UW School of Oceanography. Video screenshot: copyright Richard Strickland and Encyclopedia of Puget Sound
4/29/2014

Videos: The Puget Sound Model

The Puget Sound Model was designed and built by the University of Washington School of Oceanography in the early 1950s to simulate the tides and currents of Puget Sound. A series of videos produced by the Encyclopedia of Puget Sound describes its construction and operation.

CECs include pharmaceuticals and thousands of other commonly used chemical compounds. Photo courtesy of EPA.
4/22/2014

Contaminants of emerging concern in the Salish Sea

Thousands of different compounds are produced and used as part of our daily lives.  Examples include pharmaceuticals (NSAIDs, birth control pills, etc), personal care products (sun screen agents, scents, preservatives, etc), food additives (artificial sweeteners) and compounds used in industrial and commercial applications (flame retardants, antibiotics, etc).  Advances in analytical methods have allowed the detection of many of these compounds in the environment.

Sockey salmon. Photo courtesy of NOAA.
4/10/2014

Measuring Socio-Cultural Values Associated with Salmon in the Quinault Indian Nation

A 2014 report describes a study of socio-cultural values associated with blueback salmon in the Quinault Indian Nation. The blueback salmon (Oncorhynchus nerka) is a unique strain of sockeye that returns primarily to the Quinault river system.

4/1/2014

Statement on Salish Sea Harbor Porpoise Research and Management Needs

Harbor porpoise (Phocoena phocoena) are one of the most frequently sighted cetaceans in the Salish Sea. Anecdotal information, possibly supported with stranding encounter rate data, suggests that harbor porpoise may have increased in Puget Sound, or have shifted their distribution back to Puget Sound relative to earlier decades.

Harbour porpoise stranded due to bycattch. Source: Jan Haelters
4/1/2014

Harbor Porpoise (Phocoena phocoena vomerina): Washington inland waters stock

Harbor porpoises were once common in Puget Sound, but had all but disappeared from local waters by the 1970s. Regular and numerous anecdotal sightings in recent years show that populations of these cetaceans are now increasing and may be approaching their former status. The attached document from NOAA Fisheries describes harbor porpoise numbers and their geographic range in Puget Sound as of 2011. 

HARBOR PORPOISE (Phocoena phocoena vomerina): Washington Inland Waters Stock (NOAA Fisheries 2011)

Tidal turbines like this one developed by OpenHydro, Ltd. will be installed in Puget Sound in mid 2015 as part of a demonstration project. Sustainable, large-scale development of tidal energy will require studying and learning from these early-stage projects. Image source: OpenHydro, Ltd./DCNS
3/25/2014

Tidal energy in Puget Sound

Scientists have identified the strong underwater currents of Puget Sound's Admiralty Inlet as a potential source of electricity for nearby utilities. The following article describes some of the basic principles and mechanisms of tidal energy.  

Cover page for A Marine and Estuarine Habitat Classification System for Washington State
3/19/2014

Defining and describing Puget Sound shore types

Species and their habitats are a foundation of the ecosystem framework, but there is currently no generally agreed upon habitat classification system for Puget Sound. The closest thing for its marine and nearshore environments may be Dr. Megan Dethier’s 1990 resource A Marine and Estuarine Habitat Classification System for Washington State. Much of the work for that document was done in the general vicinity of Puget Sound, and it has been an influential resource for major habitat mapping efforts in the region, such as Shorezone.
The Puget Sound Model at the UW School of Oceanography
3/19/2014

The Puget Sound Model

The Puget Sound Model was designed and built in the early 1950s at the University of Washington School of Oceanography as a research and teaching tool for understanding Puget Sound circulation patterns.

PCBs are leading culprits in the decline of Southern Resident Killer Whales in Puget Sound. Photo courtesy of NOAA.
3/17/2014

Reducing the risk of PCBs in sediments

A 2014 paper in the journal Water Research sheds new light on a novel ‘in place’ treatment option that effectively lowers risk by reducing the activity of PCBs in sediment.

Salish Sea Hydrophone Network locations and 2011
 orca sightings from the Orca Network Whale Sightings Network. Source: Salish Sea Hydrophone Network and Orca Network.
2/11/2014

Salish Sea Hydrophone Network and Orca Network

The Salish Sea Hydrophone Network and Orca Network are two citizen science projects dedicated to furthering our understanding of abundance, distribution, behavior, and habitat use by the endangered population of Southern Resident Killer Whales, also called orcas. The Hydrophone Network lets the public listen for orcas through their computers and phones, while the Orca Network gathers and disseminates sightings of orcas as they move between Puget Sound, the Fraser River, and the Pacific Ocean.

2/7/2014

Development of Puget Sound Benthic Indicators

A Washington State Department of Ecology report establishing benthic indicators for Puget Sound. Benthic macrofauna are known to be good indicators of the status of marine environments, and benthic indices are often used as an assessment tool.

Black Scoter (Melanitta nigra). Photo by Dave Menke, U.S. Fish and Wildlife Service.
1/28/2014

Marine and terrestrial bird indicators for Puget Sound

A December 2013 report identifies marine and terrestrial bird species for use as indicators within the Puget Sound Partnership's "Vital Signs" for ecosystem health. 

Deepwater Horizon oil spill, 2010. Photo courtesy of NOAA.
1/20/2014

Making science useful in complex political and legal arenas: A case for frontloading science in anticipation of environmental changes to support natural resource laws and policies

Scientists argue that environmental disasters are inevitable and that it is just a matter of when and where they will occur. "Our coasts and oceans routinely experience significant environmental crises," writes Dr. Usha Varanasi, who makes a case for staying ahead of the curve and "frontloading the science." Her 2013 paper in the Washington Journal of Environmental Law & Policy proposes a new model for ecological disaster planning and response, in which baseline ecosystem data and syntheses are collected in advance of possible incidents. 
 
Projected declines in snow season in days for middle elevations (4,000 to 5,000 feet) in the Cascade mountains in Oregon and Washington. Graph courtesy of UW Climate Impacts Group.
1/17/2014

Climate change impacts and adaptations in Washington State: Technical summaries for decision makers

A December 2013 report by the University of Washington Climate Impacts Group projects wide reaching change for the Puget Sound ecosystem and the Pacific Northwest. Lead author: Encyclopedia of Puget Sound climate change topic editor Amy Snover.

Puget Sound Salmonid Habitat Monitoring Inventory and Recommendations
11/27/2013

Puget Sound salmonid habitat monitoring inventory and recommendations

An October 2013 report released by the Puget Sound Ecosystem Monitoring Program inventories and assesses monitoring activities of Puget Sound's ESA-listed salmon and steelhead stocks and habitats.

Harbor seal (Phoca vitulina). Image courtesy of NOAA.
11/5/2013

Paper: Food habits of harbor seals (Phoca vitulina) in two estuaries in the central Salish Sea

This paper discusses the dietary habits of harbor seals (Phoca vitulina) in two estuaries in Puget Sound.

10/15/2013

Reports: Steller Sea Lion status reports

This page includes documents and links related to the status of Steller Sea Lion in Washington state and the Salish Sea region. 

8/13/2013

2012 Puget Sound Marine Waters Overview

The Puget Sound Marine Waters 2012 Overview from the Puget Sound Ecosystem Monitoring Program synthesizes conditions measured in 2012 and has been expanded to include observations on seabirds that rely on marine waters. Read an excerpt below, or download the full report.

7/31/2013

Puget Sound Voices: Don Malins interview

The audio files below are excerpts from a May 2013 interview with Donald Malins, former Director of the Environmental Conservation Division of NOAA Fisheries. Research by Malins and his colleagues in the 1970s and mid-1980s revealed high levels of industrial toxics in sediment-dwelling fish in Puget Sound, leading to the creation of Superfund sites in the Duwamish Estuary and Commencement Bay. Read a full profile of Donald Malins. The interview was conducted by Richard Strickland and Randy Shuman in cooperation with the Encyclopedia of Puget Sound as part of the Puget Sound Voices series. Additional assistance was provided by Jake Strickland. 

Don Malins examines a fish during a research trip to the Duwamish estuary. Photo circa 1987. Photographer unknown.
7/30/2013

Toxics research that changed Puget Sound history

In the 1970s and 1980s, research from a division of NOAA's Montlake Lab suddenly changed the way scientists and the public viewed the health of Puget Sound. Their discovery of industrial toxics in the region's sediment-dwelling fish led to the creation of two Superfund sites, and new approaches to ecosystem management across the Sound. The man at the forefront of this research was Dr. Donald Malins, featured here as part of the Puget Sound Voices series.

Western Grebe; image by mikebaird, courtesy of Encyclopedia of Life
6/26/2013

Paper: Citizen science reveals an extensive shift in the winter distribution of migratory Western Grebes

A June 19, 2013 paper in the journal PLoS ONE hypothesizes that regional declines in Western Grebe populations may be related to decreasing numbers of forage fish. Using citizen science data from 36 years of bird counts, researchers were able to look at population trends up and down the entire West Coast, finding that abundance of grebes decreased in the Salish Sea but increased in southern California. North American population declined by 52% overall.

The float plane prepares to take off. Photo by Jeff Rice for the Encyclopedia of Puget Sound.
6/19/2013

About the Eyes Over Puget Sound monitoring program

Once a month, Washington State Department of Ecology marine scientists take to the air to obtain high-resolution aerial photo observations and gather water data at the agency's monitoring stations and via state ferry transects. This provides a visual picture of the health of Puget Sound, which they call Eyes Over Puget Sound or EOPS.

Vern Morgas (second from the left) and friends
5/31/2013

Puget Sound Voices: scuba pioneer

Vern Morgas remembers the early days of scuba diving in Puget Sound.

Harbor seal (Phoca vitulina). Photo courtesy of WDFW.
5/22/2013

Influence of sex and body mass on harbor seal (Phoca vitulina) diving behavior

A master's thesis prepared at Western Washington University discusses the impact of harbor seals on fish stocks in the San Juan Islands, where the seals are a year-round predator.

Drawing of Ocean Phase Chinook (king) salmon (Oncorhynchus tshawytscha)
5/1/2013

NOAA report establishes Chinook monitoring framework

A new Chinook monitoring framework is designed to build cooperation among managers and policymakers working across the Puget Sound watershed. The report, prepared by an independent team of scientists and released by NOAA, includes a regionally specific, common classification system for Chinook habitats and key ecological attributes. 

4/22/2013

Puget Sound Chinook Salmon recovery: a framework for the development of monitoring and adaptive management plans

The Puget Sound Recovery Implementation Technical Team has released a draft of a NOAA technical memorandum describing frameworks for adaptive management and monitoring of Chinook salmon in Puget Sound. Download the report.

Eelgrass bed. Photo: NOAA
3/26/2013

Eelgrass

Eelgrass (Zostera marina L.) is an aquatic flowering plant common in tidelands and shallow waters along much of Puget Sound’s shoreline. It is widely recognized for its important ecological functions, and provides habitat for many Puget Sound species such as herring, crab, shrimp, shellfish, waterfowl, and salmonids.

Bocaccio (Sebastes paucispinis). Photo courtesy of NOAA.
3/18/2013

Report: Stock assessment for Bocaccio in British Columbia waters for 2012

Canadian and U.S. governments differ on special status for bocaccio in the Salish Sea. 

Photo courtesy of NOAA
12/12/2012

Report: The effects of salmon fisheries on Southern Resident Killer Whales

A recent report by an independent science panel reviewed data on the effects of salmon fisheries on Southern Resident Killer Whale populations. The report was released on November 30, 2012 and was commissioned by NOAA Fisheries and Oceans Canada.

Chum salmon (Oncorhynchus keta). Image courtesy U.S. Fish and Wildlife Service.
12/10/2012

Salmonids in Puget Sound

Fish in the family Salmonidae (salmon, trout, and charr) play potentially integral roles in the upland freshwater, nearshore and pelagic marine ecosystems and food webs of Puget Sound.

Pacific Hake (Merluccius productus). Image courtesy of NOAA.
12/8/2012

Bentho-pelagic fish in Puget Sound

Bentho-pelagic fish utilize both bottom habitats and shallower portions of the water column, often feeding in shallow water at night and moving to deeper water to form schools during the day.

Dungeness crab (Cancer magister). Photo courtesy of NOAA.
12/8/2012

Dungeness crabs in Puget Sound

Dungeness crabs are an important resource in Puget Sound for recreational, commercial, and tribal fisheries. They utilize a variety of habitats over the course of their lives, and are vulnerable to shifts in ocean temperature and water quality.

Giant kelp (Macrocystis pyrifera) is one of the fastest growing organisms on earth. Cultivating kelp and other algae could help offset ocean acidification. Photo courtesy of NOAA.
12/6/2012

Sweetening the waters - the feasibility and efficacy of measures to protect Washington’s marine resources from ocean acidification

Washington State's ocean acidification initiative began with the launch of Governer Christine Gregoire's Blue Ribbon Panel on Ocean Acidification in December 2011. The initiative is the first of its kind in the country, and a report commissioned by the Global Ocean Health Program was released in November 2012. The report is a first step towards assessing and improving the tools at hand.

Map of the Hood Canal Action Area; courtesy Puget Sound Partnership
9/19/2012

Review finds minimal evidence for human impacts on Hood Canal hypoxia

An independent review conducted by the Puget Sound Institute (PSI) is featured in findings by the Environmental Protection Agency and the Washington State Department of Ecology that there is currently “no compelling evidence” that humans are the cause for recent trends in declines in dissolved oxygen in Hood Canal.

Puget Sound Marine Waters 2011
9/18/2012

2011 Puget Sound Marine Waters Overview

The Puget Sound Marine Waters 2011 report is now available. The report was produced by the Puget Sound Ecosystem Monitoring Program and assesses the condition and quality of the waters of Puget Sound. 

Moss Lake, part of a bog wetland complex in Moss Lake Natural Area. Photo by Jennifer Vanderhoof.
6/18/2012

King County wetland habitat

Wetlands are recognized as critical ecosystems for biodiversity because of their disproportional use by wildlife and exceptional habitats for plants. It is their unique combination of shallow aquatic habitats and adjacent terrestrial conditions extending over a wide range of geomorphic and elevational settings that accounts for their ecological complexity and resultant richness. Because of their landscape setting, each wetland tends to exhibit unique habitat types and characteristic arrays of species adapted to idiosyncratic conditions, products of each wetland’s ecological and evolutionary history.

Seagrass meadows provide valuable habitat. Photo by Randy Shuman.
6/18/2012

King County marine habitat

King County contains four major marine habitats: backshore, intertidal and shallow subtidal, deep subtidal, and riverine/sub-estuarine. Descriptions of each of these habitats and the types of flora and fauna associated with them are provided below.

5/2/2012

Marine fecal bacteria

Fecal bacteria are found in the feces of humans and other homeothermic animals. They are monitored in recreational waters because they are good indicators of harmful pathogens that are more difficult to measure. 

The invasive tunicate Styela clava. Photo: WDFW
4/23/2011

Intentional and unintentional introduction of invasive and non-native species

Non-native species are those that do not naturally occur in an ecosystem. A non-native species is considered invasive when it is capable of aggressively establishing itself and causing environmental damage to an ecosystem. Plants, animals, and pathogens all can be invasive.