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The three-dimensional Atlantis model can represent physical, chemical and biological processes and can incorporate direct human involvement, such as fisheries management, habitat improvements and economic outcomes. It has been used to study the food web to determine whether salmon in Puget Sound are more threatened by predators or by the lack of a stable food supply and to evaluate specific recovery actions to help the endangered Southern Resident killer whales.

New techniques for studying orcas have been credited with breakthroughs in reproductive and developmental research. Drones and hormone-sniffing dogs are helping scientists connect declines in food supply with low birth rates and poor health. Update: The research described in this 2016 article has now been published in the 6/29/17 issue of the journal PLOS ONE.

Last summer, scientists met at the University of Washington to address alarming findings concerning the rapid acidification of the world's oceans. Experts at that symposium warned that wildlife in the Salish Sea, from salmon to shellfish, may start to see significant effects from changing water chemistry within the next 10 to 20 years. This article summarizes the symposium's key findings and was commissioned and edited by the Washington Ocean Acidification Center which hosted the gathering. Funds for the article were provided by the Washington state legislature. [A version of this article was originally published by the Washington Ocean Acidification Center.]

An update to state rules regarding the cleanup of toxic pollution is expected to bring more attention to factors like race, ethnicity and income within populations that live near contaminated sites.

The diversity of streams in the county is a reflection of the diversity of its geography. From the small rivulets that begin high in the Cascade Mountains, to the brooks that flow gently across the lowlands, to the five major rivers of the county, there are over 4,800 kilometers (3,000 miles) of perennial streamcourses in King County. Despite the impressive total length, King County ...

Scientists at the Washington Department of Ecology along with many other researchers have spent years studying and debating the problem of low oxygen in Puget Sound. Now, many new developments — technical, scientific and legal — are reaching a critical stage and setting up a framework to make some major decisions. This is part four of a four-part series originally published in the Puget Sound Institute blog.

Environmental engineers and chemists at the University of Washington Tacoma have identified a mysterious compound implicated in the deaths of large numbers of coho salmon in Puget Sound. The chemical is linked with a rubber additive commonly used in tires and is thought to kill more than half of the spawning coho that enter the region's urban streams every year. 

As the plight of Puget Sound’s southern resident orcas becomes increasingly desperate, with the population dropping from 98 to 75 in just 22 years, scientists are weighing the options of medical intervention. In part two of our two-part series The Orca Docs we look at how veterinarians have intervened with other animals in the wild, and how this might apply to the situation here in Puget Sound. [Part one, "When should medical experts intervene to save a killer whale?" is also available.]