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A 2021 paper in the journal PLoS ONE describes a non-traditional approach to estimating the size of three harbor seal management stocks in the inland waters of Washington using aerial line-transect surveys and tagging data.

The number of golden-crowned kinglets in the Puget Sound watershed has declined by more than 91% over a recent 50-year period, according to data from the North American Breeding Bird Survey. The data was reported by the Washington Department of Fish and Wildlife, which tracks the information for the Puget Sound Partnership’s terrestrial bird indicator. The indicator was established to monitor the health of Puget Sound’s species and food webs.

After a wet winter/spring transition it has been noticeably drier, warmer and sunnier. River flows are near normal levels and in Puget Sound and coastal bays salinity is increasing above normal. The spring bloom is developing but not very pronounced, yet, Noctiluca is already visible in southern Hood Canal. Suspended sediment near rivers and creeks, failing bluffs, and shellfish activities are frequent. Capturing herring spawning from the plane is informative; pilots share their observations.

Despite a La Niña, precipitation and rain have been lower since March, leaving only snow-fed rivers running high. Due to lower rainfall and warm summer temperatures the salinity of Puget Sound is now generally higher. Strong blooms and large patches of organic material and macro-algae are building up in many places and wash onto beaches. During very hot summer days, tidal mudflats and beaches can get really warm. Beach wrack can harbor increased bacteria numbers now. See SCUBA cleaning up at Redondo beach.

A Lopez Island-based nonprofit says the protection of critical habitat for native plants can also preserve a wealth of traditional knowledge. The group is working with private landowners to raise awareness of culturally important plants hidden in the bogs and underbrush of Puget Sound's natural areas.

A resident population of minke whales is catching the attention of scientists who want to learn if the elusive mammals are found here year-round. While small compared to their cousins the blue whales, minkes are still among the largest creatures in the Salish Sea.

Warming waters threaten the recovery of salmon in Puget Sound. New findings about stream temperature could help salmon survive the threats of climate change.

The Nooksack River watershed spans part of the border between British Columbia and the State of Washington. In August 2018, the international, multi-agency Nooksack River Transboundary Technical Collaboration Group (TCG) was established to implement a three-year work plan to reduce fecal bacteria concentrations in the Nooksack River watershed. The 2020-2021 TCG annual report summarizes third and final year project activities and focuses on three of the watershed's transborder sub-basins.

An article published in PLoS ONE in 2021 describes a study of hormone concentrations in gray whales. The findings may contribute to increased knowledge of reproductive physiology and population dynamics among the species.