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A December 2014 paper in the journal Aquatic Ecosystem Health & Management describes a project to identify transboundary ecosystem indicators for the Salish Sea. 

The region's famed mollusks provide more than just money and jobs. They offer what are called ecosystem services—a wide variety of benefits that humans derive from an ecosystem.

This 2006 technical report for the Puget Sound Nearshore Partnership describes how shellfish have high ecological, economical, cultural, recreational value, however human activity is threatening their existence by altering their native habitat with changes in land use, shoreline modifications, stormwater, sewage and industrial discharge.

The field of decision analysis studies and develops rigorous and practical methods for improving how we make decisions. Over the past three years, the Puget Sound Partnership has invested in decision science expertise in its ongoing role of supporting effective Puget Sound recovery.  This paper describes some of these efforts and analyzes several decision support ideals.

A 2005 report from the Washington Sea Grant Program describing the history and current state of native Olympia oysters including their ecology, history with human interactions, prefered habitat, and reestablishment efforts in the Puget Sound region.

Every two years, statute requires the Puget Sound Partnership to produce a Biennial Science Work Plan (BSWP). Its primary purposes are to I) assess how well ongoing research addresses decision-­‐critical uncertainties relating to the recovery of Puget Sound; II) identify additional science needs for recovery; III) make recommendations for priority science actions in the coming biennium; and IV) suggest how science can better support recovery. This document is the third BSWP to be produced in the series, covering the 2014-­2016 biennium.

This 2014 Puget Sound Institue report shows baseline data, surveyed from Hood Canal residents, of four subjective indicators: accessing locally harvested products, experiencing positive emotions, working with community members to solve natural resource issues, and knowledge gained from different communication sources.

A 2014 report prepared by the Stillaguamish Tribe analyzes potential causes of changes in peak and low flows in the Stillaguamish River basin. 

Pollution from stormwater has been called one of the greatest threats to Puget Sound. How much will it cost to hold back the rain? A new EPA-funded study says the price could reach billions per year, a figure that dwarfs current state and federal allocations.