Scientists are reporting a decline in oxygen-rich waters throughout the world. Causes for the decline vary from place to place but may involve climate change and increasing discharges of tainted water. In Puget Sound, low oxygen levels can occur naturally or due to eutrophication from human-caused pollution. In this five-part series, we describe the critical nature of oxygen to Puget Sound sea life. Scientists are finding that changes in oxygen levels can lead to physiological adjustments, shifts in predator-prey relationships and other repercussions throughout the food web.

As observed in Hood Canal, low-oxygen conditions can upend the lives of Dungeness crabs trying to stay alive. Levels of dissolved oxygen can alter predator-prey relationships for a multitude of species, affecting populations throughout the food web. Part two of our series "Oxygen for life" examines a crab case study.

In time, lower dissolved oxygen worsened by climate change could increase the abundance of rare species in Puget Sound while putting populations of more common species into a tailspin. Part three of our series "Oxygen for life" looks at how warmer waters will gradually make it harder for many sea creatures to breathe. 

How do excess nutrients trigger low oxygen conditions in Puget Sound and what do those conditions mean for the species that live here?

For critically endangered animal populations, experts worry that a highly infectious disease could be the final nail in the coffin, forcing the species into extinction. That’s one reason why federal authorities approved the development and deployment of a new vaccine to ward off the deadly morbillivirus among Hawaiian monk seals. The vaccination program raises the possibility of using vaccines to prevent disease among Puget Sound's southern resident killer whales, but no specific steps have been taken so far.

As the plight of Puget Sound’s southern resident orcas becomes increasingly desperate, with the population dropping from 98 to 75 in just 22 years, scientists are weighing the options of medical intervention. In part two of our two-part series The Orca Docs we look at how veterinarians have intervened with other animals in the wild, and how this might apply to the situation here in Puget Sound. [Part one, "When should medical experts intervene to save a killer whale?" is also available.]

The death of a young female orca in September has sparked a discussion of how and whether scientists should step in with medical care for distressed animals in the wild. Medical intervention has become routine for some endangered mammals, but scientists say Puget Sound’s resident orcas present a series of unique challenges and ethical questions. In part one of our two-part series The Orca Docs we look at how scientists are preparing to treat endangered southern resident orcas that face starvation and risks of disease.

More than 70 percent of the seabird population of Puget Sound nests on a single island in the Strait of Juan de Fuca. That includes a massive colony of rhinoceros auklets that has drawn the interest of scientists and birders alike. Our writer Eric Wagner visited the island this summer and reports on a long-term study of the auklets that is revealing new information about the health of seabirds in the Salish Sea. 

The reasons for the surprise visits are unknown, but changes in environmental conditions here or elsewhere are one possibility.

Recent images of a mother orca appearing to grieve for her dead calf have brought worldwide attention to the plight of Puget Sound’s endangered Southern Resident orcas. As orca numbers decline, we look at how the effects of toxic chemicals on the whales are magnified even as the residents slowly starve from a general lack of Chinook salmon, their chief source of food. 

An intensive research program in the U.S. and Canada is studying why so few salmon in the Salish Sea are returning home to spawn. It is uncovering a complex web of problems involving predators, prey and other factors that put salmon at risk as they migrate to the ocean. We present a four-part series on the Salish Sea Marine Survival Project, including new findings presented at the 2018 Salish Sea Ecosystem Conference last spring in Seattle.

Chemicals, disease and other stressors can increase a salmon's chance of being eaten or reduce its ability to catch food. We wrap up our series on the Salish Sea Marine Survival Project with a look at some of the lesser-known, but still significant factors contributing to salmon declines in the Salish Sea.

Researchers are analyzing the harmful effects of creosote-treated wood pilings on Pacific herring and shellfish in Puget Sound. Studies show that piling removal projects can ease the impacts, but only if carefully done. 

A recent influx of anchovies into Puget Sound may have saved some steelhead from predators, but researchers seek more evidence to prove the connection. Our series on the Salish Sea Marine Survival Project continues with a look at these and other potential impacts from predators on the region's salmon and steelhead.

Getting bigger faster can help save juvenile Chinook salmon from a gauntlet of hungry predators ranging from birds and marine mammals to larger fish. We continue our series on the Salish Sea Marine Survival Project with a look at what helps salmon grow and prepare for life in the open ocean. 

An intensive research program in the U.S. and Canada is studying why so few salmon in the Salish Sea are returning home to spawn. They are uncovering a complex web of problems involving predators, prey and other factors that put salmon at risk as they migrate to the ocean. We begin a four-part series on the Salish Sea Marine Survival Project, including new findings presented at the 2018 Salish Sea Ecosystem Conference last spring in Seattle. 

Kids around the region are learning about the Salish Sea thanks to a new book that is being offered — in many cases free of cost — to Washington schools and libraries. Explore the Salish Sea by Joe Gaydos and Audrey Benedict inspires the next generation to appreciate and perhaps someday protect the environment close at hand. 

A high-profile salmon escape led to a ban on salmon farms in Washington earlier this year. But just across the border, scientists say salmon farms in British Columbia expose migrating fish from Puget Sound to potential maladies like parasites, bacteria and dangerous viruses. They say simply getting rid of salmon farms in Washington does not put the potential impacts to rest. 

Ocean acidification could be up to twice as severe in fragile seagrass habitats as it is in the open ocean, according to a study published last April in the Proceedings of the National Academy of Sciences. The conditions may threaten Dungeness crabs by 2050 and will be especially pronounced in the winter, the study says.

Pacific herring exposed to stormwater in Puget Sound show some of the same effects as fish exposed to major oil spills. Symptoms include heart and developmental problems.  

New studies show that eelgrass wasting disease is more common in warmer waters, leading to concerns over the future effects of climate change on eelgrass populations in Puget Sound. We continue our series on science findings from the 2018 Salish Sea Ecosystem Conference.  

Genetic testing shows that invasive European green crabs in Puget Sound likely did not come from the Sooke Basin in British Columbia as previously thought. New findings on the crab's origins were presented at the 2018 Salish Sea Ecosystem Conference in Seattle. 

State agencies tracking pollution levels in Puget Sound have discovered traces of oxycodone in the tissues of native bay mussels (Mytilus trossulus) from Seattle and Bremerton area harbors. The findings were presented at the 2018 Salish Sea Ecosystem Conference in Seattle. 

Scientists are trying to learn how to restore Puget Sound’s diminishing kelp forests in an effort to stave off habitat loss for rockfish and other threatened species.

Bridging the gap between nature and technology might be a challenge for the Puget Sound region, but tech leaders could play an important role in protecting and restoring the ecosystem, according to a panel of experts at last week’s Salish Sea Ecosystem Conference in Seattle.

Gov. Jay Inslee joined former Interior Secretary Sally Jewell to open three days of science talks at the Salish Sea Ecosystem Conference in Seattle. The conference includes about 700 scientific presentations on topics ranging from orcas to habitat restoration, from climate change to toxic chemicals.

Social scientists around the Salish Sea are predicting the effects of environmental change through the lens of culturally important foods.

Some of the most important fish in the Salish Sea food web are also the most mysterious. Researchers have only begun to understand how many there are, where they go, and how we can preserve their populations for the future. A University of Washington researcher describes how scientists are looking into the problem.

New techniques for studying orcas have been credited with breakthroughs in reproductive and developmental research. Drones and hormone-sniffing dogs are helping scientists connect declines in food supply with low birth rates and poor health. Update: The research described in this 2016 article has now been published in the 6/29/17 issue of the journal PLOS ONE. 

New, smaller acoustic tags will allow scientists to track steelhead migrations in Puget Sound in ways that were once impossible. Will they provide answers to the mysterious decline of these now-threatened fish? 

The Salish Sea Marine Survival Project has mobilized dozens of organizations in the U.S. and Canada to find an answer to one of the region's greatest mysteries. What is killing so many young salmon before they can return home to spawn? A series of talks at the 2016 Salish Sea Ecosystem Conference brought together some of the latest research. 

Many of Puget Sound's Chinook salmon spend their entire lives in local waters and don't migrate to the open ocean. These fish tend to collect more contaminants in their bodies because of the sound's relatively high levels of pollution. 

It turns out that a gooey substance known as biofilm is a big deal for Salish Sea shorebirds, providing critical food for some species. But could a proposed port expansion in Vancouver threaten this slimy resource?

Researchers are proposing a shift in thinking about how some of the region’s most damaging pollutants enter Puget Sound species like herring, salmon and orcas.

Researchers are studying how persistent pollutants such as PCBs avoid settling to the bottom of Puget Sound. This article continues our coverage of new theories on the spread of toxic chemicals in the food web. 

The mysterious practice of killing porpoises may have a useful function, but it has yet to be fully explained, according to orca researcher Deborah Giles.